Factsheet for VIT_07s0129g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28413	Soybean	plasma membrane	78.27	80.43
KRH77065	Soybean	plasma membrane	78.08	80.08
KRH58028	Soybean	plasma membrane	78.08	78.68
AT2G23150.1	Thale cress	plasma membrane	76.92	78.59
KRH04493	Soybean	peroxisome	77.88	78.49
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	75.58	76.91
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	74.23	75.83
CDY21478	Canola	plasma membrane	73.27	75.75
CDX76871	Canola	cytosol, peroxisome, plasma membrane	75.0	75.73
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	74.42	75.15
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.54	74.25
AT5G67330.1	Thale cress	plasma membrane	72.12	73.24
CDY57441	Canola	peroxisome	71.35	72.46
Bra012154.1-P	Field mustard	peroxisome	71.35	72.46
CDX83202	Canola	plasma membrane	74.04	71.56
CDY12837	Canola	nucleus	71.35	55.71
VIT_18s0001g02120.t01	Wine grape	plasma membrane	39.81	38.19
VIT_09s0070g00210.t01	Wine grape	plastid	38.85	37.34
VIT_18s0001g02140.t01	Wine grape	plasma membrane	34.42	36.23
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	34.62	35.29
VIT_18s0001g02130.t01	Wine grape	plastid	12.31	31.53
Bra039185.1-P	Field mustard	cytosol	75.58	30.23
VIT_08s0040g01730.t01	Wine grape	plasma membrane	21.92	8.65

Protein Annotations

EntrezGene:100268041	wikigene:100268041	MapMan:24.2.3.10	ProteinID:CCB57771	ProteinID:CCB57771.1	UniProt:F6HSW1
EMBL:FN596246	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EntrezGene:LOC100268041	wikigene:LOC100268041
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46
TIGR:TC57560	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00015C9369	ArrayExpress:VIT_07s0129g00620	EnsemblPlantsGene:VIT_07s0129g00620
EnsemblPlants:VIT_07s0129g00620.t01	unigene:Vvi.1555	RefSeq:XP_002283902	RefSeq:XP_002283902.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:15855246..15859390

Molecular Weight (calculated)

57262.6 Da

IEP (calculated)

5.029

GRAVY (calculated)

0.592

Length

520 amino acids

Sequence
(BLAST)

001: MPPREESEES ERPLLSRAHD SEEDILDETA YDSSEKVVIV GIEDGDGGDW SRAPPFSWKK LWLFTGPGFL MSIAFLDPGN LEGDLQAGAI AGYSLLWLLL
101: WATAMGLLVQ LLAARLGVAT GRHLAELCRD EYPKWARMVL WVMAELALIG ADIQEVIGSA IAIKILSNGV LPLWSGVIIT AFDCFIFLFL ENYGVRKLEA
201: VFAFLIATMA ISFAWMFGEA KPSGVELLLG ILIPKLSSKT IKQAVGVVGC IIMPHNVFLH SALVQSREID HSKKGRVQEA LNYYSIESTV ALILSFIINL
301: FVTTVFAKGF YGTEQANNIG LVNAGQYLQE KYGGGFFPIL YIWGIGLLAA GQSSTITGTY AGQFIMGGFL NLRLKKWIRA LITRSCAIVP TMIVALVFDT
401: SEDTLDVMNE WLNVLQSIQI PFALIPLLCL VSKEQIMGTF KIGPVLKVVA WLVAALVIII NGYLLVDFFS SEVNGLLIGF FICTFTAAYV AFIIYLVFRA
501: VNFYPWLPFL PSKRLSNTGS

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.