CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 1
peroxisome 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	CDX78905	AT4G19030.1	21798944
AT5G67330.1	CDX98596	AT4G19030.1	21798944
AT5G67330.1	CDX99411	AT4G19030.1	21798944
AT5G67330.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012154.1-P	Field mustard	peroxisome	100.0	100.0
AT5G67330.1	Thale cress	plasma membrane	95.12	95.12
CDY12837	Canola	nucleus	99.22	76.28
CDY21478	Canola	plasma membrane	73.63	74.95
CDX76871	Canola	cytosol, peroxisome, plasma membrane	75.0	74.56
KRH28413	Soybean	plasma membrane	73.63	74.51
KRH77065	Soybean	plasma membrane	73.63	74.36
KRH04493	Soybean	peroxisome	73.05	72.48
KRH58028	Soybean	plasma membrane	72.66	72.09
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.48	71.91
VIT_07s0129g00620.t01	Wine grape	plasma membrane	72.46	71.35
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	71.48	71.07
CDX83202	Canola	plasma membrane	74.41	70.82
CDY17036	Canola	cytosol, nucleus, plasma membrane	69.53	67.55
CDY47594	Canola	cytosol, nucleus, plasma membrane	69.14	67.17
CDY17090	Canola	cytosol, peroxisome, plasma membrane	68.55	65.85
CDY46091	Canola	cytosol, nucleus, plastid	23.83	63.54
CDY06751	Canola	plasma membrane	51.56	63.01
CDY64917	Canola	cytosol, plasma membrane, plastid	63.48	61.21
CDY62556	Canola	plasma membrane	63.28	60.9
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	10.16	44.83
CDY33364	Canola	cytosol, peroxisome, plasma membrane	35.74	37.2
CDY35054	Canola	extracellular	7.81	37.04
CDY39940	Canola	cytosol, peroxisome, plasma membrane	36.52	36.03
CDX87346	Canola	cytosol, peroxisome, plasma membrane	36.52	36.03
CDY63970	Canola	plastid	37.11	35.71
CDX79348	Canola	cytosol, plasma membrane, vacuole	35.35	34.41
CDY35053	Canola	mitochondrion, plasma membrane	18.75	33.33
CDX67970	Canola	plasma membrane	31.25	33.06
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	36.91	28.42
CDX70318	Canola	plasma membrane	19.34	8.26
CDY10393	Canola	plasma membrane	18.95	8.11

Protein Annotations

MapMan:24.2.3.10	GO:A0A078J4J3	UniProt:A0A078J4J3	EnsemblPlants:CDY57441	ProteinID:CDY57441	ProteinID:CDY57441.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00022220001	HAMAP:MF_00221	InterPro:NRAMP_fam
PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI00025416E9	SEG:seg	:	:	:	:

Description

BnaAnng14550DBnaAnng14550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4J3]

Coordinates

chrLK033575:-:40082..42520

Molecular Weight (calculated)

56176.2 Da

IEP (calculated)

5.020

GRAVY (calculated)

0.579

Length

512 amino acids

Sequence
(BLAST)

001: MSEPERARPL LASEERAYED TEKVHIVGVD EEDGADYDDE LGNSPRFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSRKV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKA
301: FYGTDIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAIV PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATSVALL VPVIIFAVAY VVFVLYLISR GLTYTTPWQL
501: VSSQKVTERD DE

Best Arabidopsis Sequence Match ( AT5G67330.1 )
(BLAST)

001: MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS
301: FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY VVFVLYLISR GLTYTPWQLV
501: ASSHKEPQRD DE

Arabidopsis Description

NRAMP4Metal transporter Nramp4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN18]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.