CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	96.02	94.52
CDX83202	Canola	plasma membrane	99.2	92.75
CDX76871	Canola	cytosol, peroxisome, plasma membrane	91.45	89.32
AT2G23150.1	Thale cress	plasma membrane	88.47	87.43
CDY46091	Canola	cytosol, nucleus, plastid	28.83	75.52
KRH28413	Soybean	plasma membrane	75.15	74.7
KRH77065	Soybean	plasma membrane	74.75	74.16
CDY57441	Canola	peroxisome	74.95	73.63
VIT_07s0129g00620.t01	Wine grape	plasma membrane	75.75	73.27
KRH58028	Soybean	plasma membrane	74.16	72.29
KRH04493	Soybean	peroxisome	74.16	72.29
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	70.78	69.94
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	71.17	69.51
CDY47594	Canola	cytosol, nucleus, plasma membrane	70.38	67.17
CDY17036	Canola	cytosol, nucleus, plasma membrane	69.98	66.79
CDY17090	Canola	cytosol, peroxisome, plasma membrane	69.98	66.04
CDY06751	Canola	plasma membrane	52.09	62.53
CDY62556	Canola	plasma membrane	64.81	61.28
CDY64917	Canola	cytosol, plasma membrane, plastid	64.41	61.02
CDY12837	Canola	nucleus	74.95	56.61
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	10.14	43.97
CDY35054	Canola	extracellular	7.75	36.11
CDY33364	Canola	cytosol, peroxisome, plasma membrane	34.39	35.16
CDX87346	Canola	cytosol, peroxisome, plasma membrane	35.59	34.49
CDY39940	Canola	cytosol, peroxisome, plasma membrane	35.59	34.49
CDY63970	Canola	plastid	35.98	34.02
CDX79348	Canola	cytosol, plasma membrane, vacuole	34.99	33.46
CDX67970	Canola	plasma membrane	31.21	32.44
CDY35053	Canola	mitochondrion, plasma membrane	17.5	30.56
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	35.79	27.07
CDX70318	Canola	plasma membrane	19.88	8.35
CDY10393	Canola	plasma membrane	19.68	8.28

Protein Annotations

MapMan:24.2.3.10	GO:A0A078G9R0	UniProt:A0A078G9R0	EnsemblPlants:CDY21478	ProteinID:CDY21478	ProteinID:CDY21478.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00015894001	HAMAP:MF_00221	InterPro:NRAMP_fam
PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI0004EF3F8E	SEG:seg	:	:	:	:

Description

BnaC03g27190DBnaC03g27190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9R0]

Coordinates

chrLK032121:-:415753..417686

Molecular Weight (calculated)

55600.4 Da

IEP (calculated)

4.766

GRAVY (calculated)

0.560

Length

503 amino acids

Sequence
(BLAST)

001: MSRSENDRPL LIDRIDEEEE ERAYDETEKV HIVRDEDDNE RDLEYGVGCG GAPPFSWRKL WLFTGPGFLM SIAFLDPGNL EGDLQAGAVA GYSLLWLLMW
101: ATAMGLLVQL LSARLGVATG RHLAELCREE YPTWAGMVLW VMAELALIGS DIQEVIGSAI AIKILTNGLL PLWAGVIITA LDCFVFLFLE NYGIRKLEAV
201: FAVLIGTMAV AFAWMFGQAK PSGSELLVGI LVPKLSSRTI QKAVGVVGCI IMPHNVFLHS ALVQSREVNK RQKYRVQEAI NYYTIESTIA LIVSFVINLF
301: VTTVFAKGFY NTDLADSIGL VNAGQYLQDK YGGGLFPILY IWGIGLLAAG QSSTITGTYA GQFIMGGFLN FKMKKWLRAL ITRSCAIIPT IIVALVFDSS
401: EATLDVLNEW LNVLQSIQIP FALIPLLCLV SKEQIMGSFK IGPFYQTIAW LVAALVIMIN GYLLLEFFSS EVSGVIYTGF VTLFSLCVLY YISSSSYVLV
501: YRC

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.