CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	26.56	43.97
CDX76871	Canola	cytosol, peroxisome, plasma membrane	77.6	28.93
CDY21478	Canola	plasma membrane	75.52	28.83
CDX83202	Canola	plasma membrane	75.0	26.77
CDY57441	Canola	peroxisome	63.54	23.83
CDY47594	Canola	cytosol, nucleus, plasma membrane	60.42	22.01
CDY17036	Canola	cytosol, nucleus, plasma membrane	60.42	22.01
CDY17090	Canola	cytosol, peroxisome, plasma membrane	60.42	21.76
CDY62556	Canola	plasma membrane	53.65	19.36
CDY64917	Canola	cytosol, plasma membrane, plastid	52.6	19.02
CDY12837	Canola	nucleus	63.54	18.32
CDY39940	Canola	cytosol, peroxisome, plasma membrane	35.42	13.1
CDX87346	Canola	cytosol, peroxisome, plasma membrane	35.42	13.1
CDY63970	Canola	plastid	35.94	12.97
CDX67970	Canola	plasma membrane	31.77	12.6
CDY33364	Canola	cytosol, peroxisome, plasma membrane	32.29	12.6
CDX79348	Canola	cytosol, plasma membrane, vacuole	34.38	12.55
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	35.94	10.38
CDY06751	Canola	plasma membrane	13.02	5.97
CDY35054	Canola	extracellular	3.12	5.56
CDX70318	Canola	plasma membrane	20.31	3.26
CDY10393	Canola	plasma membrane	19.79	3.18
CDY35053	Canola	mitochondrion, plasma membrane	3.65	2.43

Protein Annotations

MapMan:35.1	GO:A0A078I8C3	UniProt:A0A078I8C3	EnsemblPlants:CDY46091	ProteinID:CDY46091	ProteinID:CDY46091.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00083246001	InterPro:NRAMP_fam	PFAM:PF01566
PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	TMHMM:TMhelix	UniParc:UPI0004EDC88D	SEG:seg	:

Description

BnaA09g42150DBnaA09g42150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8C3]

Coordinates

chrLK032649:+:188089..189095

Molecular Weight (calculated)

21732.8 Da

IEP (calculated)

4.332

GRAVY (calculated)

-0.135

Length

192 amino acids

Sequence
(BLAST)

001: MSRLENDRPL LTERIYEELH EEEEETAYDE AEKVHIASDD ERDLEHGLGC GGAPPFSWRK LWLFTGPGFL MSIAFLDPGN LEGDLQAGAI AGYSLLWLLM
101: WATAMGLLVQ LLSARLGVAT GRHLAELCRE EYPTWAGMVL WVMAELALIG SDIQDSGSHW KCHSYPDSDQ WDLPSLGWCR YYSSRLFRLL VP

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.