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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35053 Canola mitochondrion, plasma membrane 54.27 92.71
CDY35054 Canola extracellular 19.51 88.89
AT1G15960.1 Thale cress plasma membrane 92.07 85.96
CDX79348 Canola cytosol, plasma membrane, vacuole 85.57 80.04
CDX87346 Canola cytosol, peroxisome, plasma membrane 83.94 79.58
CDY39940 Canola cytosol, peroxisome, plasma membrane 83.94 79.58
CDX67970 Canola plasma membrane 78.05 79.34
CDY63970 Canola plastid 85.77 79.32
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 18.09 76.72
VIT_09s0070g00210.t01 Wine grape plastid 79.06 71.9
KRH23641 Soybean plastid 79.47 71.88
KRH09654 Soybean plastid 79.47 71.61
KRH47347 Soybean plasma membrane 78.86 71.19
Solyc03g116900.2.1 Tomato cytosol, peroxisome, plasma membrane 74.39 70.11
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 75.41 68.32
TraesCS7A01G464300.2 Wheat plasma membrane 73.98 66.42
TraesCS7B01G364800.1 Wheat plasma membrane 73.98 66.42
TraesCS7D01G451900.1 Wheat plasma membrane 73.98 66.42
HORVU7Hr1G106570.1 Barley plasma membrane 73.78 66.24
KRH44555 Soybean mitochondrion 78.86 65.99
EER90213 Sorghum plastid 73.17 65.45
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 72.76 65.09
Zm00001d014391_P008 Maize plasma membrane 72.56 64.91
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 85.77 63.46
CDY57441 Canola peroxisome 37.2 35.74
CDX76871 Canola cytosol, peroxisome, plasma membrane 36.99 35.34
CDY21478 Canola plasma membrane 35.16 34.39
CDY62556 Canola plasma membrane 36.59 33.83
CDY64917 Canola cytosol, plasma membrane, plastid 36.38 33.71
CDY17036 Canola cytosol, nucleus, plasma membrane 35.98 33.59
CDY47594 Canola cytosol, nucleus, plasma membrane 35.77 33.4
CDY17090 Canola cytosol, peroxisome, plasma membrane 35.77 33.02
CDX83202 Canola plasma membrane 35.77 32.71
CDY06751 Canola plasma membrane 27.64 32.46
CDY46091 Canola cytosol, nucleus, plastid 12.6 32.29
CDY12837 Canola nucleus 37.4 27.63
CDY10393 Canola plasma membrane 20.73 8.53
CDX70318 Canola plasma membrane 20.53 8.43
Protein Annotations
MapMan:24.2.3.10GO:A0A078H787UniProt:A0A078H787EnsemblPlants:CDY33364ProteinID:CDY33364ProteinID:CDY33364.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0030001GO:GO:0046873EnsemblPlantsGene:GSBRNA2T00054209001HAMAP:MF_00221InterPro:NRAMP_fam
PFAM:PF01566PRINTS:PR00447PANTHER:PTHR11706PANTHER:PTHR11706:SF38TIGRFAMs:TIGR01197TMHMM:TMhelix
UniParc:UPI0004EDF33CSEG:seg::::
Description
BnaC05g12190DBnaC05g12190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H787]
Coordinates
chrLK032312:+:266988..269911
Molecular Weight (calculated)
53217.3 Da
IEP (calculated)
9.237
GRAVY (calculated)
0.704
Length
492 amino acids
Sequence
(BLAST)
001: MADATESGGN TSFSNSNSKK ILVSEKKSWK NFFSYLGPGF LVSIAYIDPG NFETDLQSGA QYKYELLWII LVASCAALVI QSLAANLGVV TGKHLAEHCR
101: AEYSKVPNFM LWVVAEIAVV ALIGTAFALN MLFNIPVWIG VLLTGFSTLI LLALQKYGIR KLEFLIAFLV LTIALCFLIE LHYSKPDPKE VLYGLFVPQL
201: KGNGATGLAI SLLGAMVMPH NLFLHSALVL SRKIPRSVTG IKEACRYYLI ESGLALTVAF LINVSVISVS GAVCNASDLS PEDQASCEDL DLNKASFLLR
301: NVVGKWSSKL FAIALLASGQ SSTITGTYAG QYVMQGFLDL TIRPWLRNFL TRCLAIIPSL IVALIGGSAG AGKLIIIASM ILSFELPFAL VPLLKFTCSK
401: TKMGSHANSL LISSVTWVIG GLIMGINIYY LVSSFIKLIL HGHMKLVAVV FLGILGFSGI AIYLAAIGYL VLRKNRESST HCLPSNIVNM HT
Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.