Factsheet for VIT_09s0070g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23641	Soybean	plastid	83.55	83.09
KRH09654	Soybean	plastid	83.55	82.78
Bra026089.1-P	Field mustard	plasma membrane	69.69	80.56
KRH47347	Soybean	plasma membrane	80.78	80.18
AT1G80830.1	Thale cress	plastid	77.82	79.14
AT1G15960.1	Thale cress	plasma membrane	77.08	79.13
CDY33364	Canola	cytosol, peroxisome, plasma membrane	71.9	79.06
CDX79348	Canola	cytosol, plasma membrane, vacuole	76.71	78.9
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	76.71	78.75
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	76.89	78.2
CDY63970	Canola	plastid	76.89	78.2
CDX67970	Canola	plasma membrane	69.87	78.1
CDY35054	Canola	extracellular	15.53	77.78
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	77.82	77.53
CDY39940	Canola	cytosol, peroxisome, plasma membrane	74.31	77.46
CDY35053	Canola	mitochondrion, plasma membrane	41.04	77.08
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	73.94	77.07
CDX87346	Canola	cytosol, peroxisome, plasma membrane	73.94	77.07
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	16.45	76.72
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	73.57	76.25
KRH44555	Soybean	mitochondrion	81.7	75.17
TraesCS7D01G451900.1	Wheat	plasma membrane	74.68	73.72
TraesCS7A01G464300.2	Wheat	plasma membrane	74.68	73.72
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	74.86	73.64
TraesCS7B01G364800.1	Wheat	plasma membrane	74.49	73.54
EER90213	Sorghum	plastid	74.49	73.27
HORVU7Hr1G106570.1	Barley	plasma membrane	74.12	73.18
Zm00001d014391_P008	Maize	plasma membrane	74.12	72.91
Bra033988.1-P	Field mustard	plasma membrane	63.96	63.72
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	76.89	62.56
VIT_18s0001g02140.t01	Wine grape	plasma membrane	51.76	56.68
VIT_18s0001g02120.t01	Wine grape	plasma membrane	56.38	56.27
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	50.83	53.92
VIT_18s0001g02130.t01	Wine grape	plastid	17.19	45.81
VIT_07s0129g00620.t01	Wine grape	plasma membrane	37.34	38.85
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.67	36.01
VIT_08s0040g01730.t01	Wine grape	plasma membrane	22.0	9.03

Protein Annotations

EntrezGene:100256746	wikigene:100256746	MapMan:24.2.3.10	ProteinID:CBI38940	ProteinID:CBI38940.3	ncoils:Coil
UniProt:D7U876	EMBL:FN596740	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	EntrezGene:LOC100256746	wikigene:LOC100256746	HAMAP:MF_00221	InterPro:NRAMP_fam
PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI00015CB96F	ArrayExpress:VIT_09s0070g00210	EnsemblPlantsGene:VIT_09s0070g00210	EnsemblPlants:VIT_09s0070g00210.t01	unigene:Vvi.14059	RefSeq:XP_002273263
RefSeq:XP_002273263.1	RefSeq:XP_010655022.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:13242469..13257160

Molecular Weight (calculated)

58718.0 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.653

Length

541 amino acids

Sequence
(BLAST)

001: MASTPVQPQF IASTGNRSLS NALLIENPES DQIVVPDRKS WKNLFAYMGP GFLVSIAYID PGNFETDLQS GAQYKYELLW IILVASCAAL IIQSLAANLG
101: VVTGKHLAEH CRIEYPKVPN FILWVLAEIA VVACDIPEVI GTAFALNMLF NIPVWCGVLL TGLSTLVLLA LQQYGVRKLE FFIAFLVLTI AACFFVELGY
201: AKPNSSEVLR GLFVPQLKGN GATGLAISLL GAMVMPHNLF LHSALVLSRK IPRSVRGIKE ACRFYMIESG FALMVAFLIN VSVICVSGAV CSSSNLNLDD
301: QESCKDLDLN KASFLLRNVL GKWSSKLFAI ALLASGQSST ITGTYAGQYV MQGFLDLRLQ PWIRNFLTRC LAIIPSLIVA IIGGSSGAGK LIIIASMILS
401: FELPFALIPL LKFTSCKTKM GAYVNSTMIT AITWIIGSLL MAINIYYLAS SFIKLLLHSH LKLVAAVFAG IIGFSGMIVY VCGIGYLVFR KNKKATHLLA
501: LATAENGELT NDVGGASMDC LPREDIVSMQ LPQRRVTVDV D

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.