Factsheet for Bra026089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
cytosol 1
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35053	Canola	mitochondrion, plasma membrane	60.47	98.26
CDY35054	Canola	extracellular	20.73	89.81
AT1G15960.1	Thale cress	plasma membrane	91.45	81.21
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	86.54	76.85
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	85.04	76.69
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	85.47	75.19
Bra033988.1-P	Field mustard	plasma membrane	83.12	71.64
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	17.73	71.55
VIT_09s0070g00210.t01	Wine grape	plastid	80.56	69.69
KRH47347	Soybean	plasma membrane	80.13	68.81
KRH23641	Soybean	plastid	79.91	68.75
KRH09654	Soybean	plastid	80.13	68.68
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	75.0	67.24
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	76.5	65.93
TraesCS7A01G464300.2	Wheat	plasma membrane	75.0	64.05
TraesCS7B01G364800.1	Wheat	plasma membrane	75.0	64.05
TraesCS7D01G451900.1	Wheat	plasma membrane	75.0	64.05
HORVU7Hr1G106570.1	Barley	plasma membrane	74.79	63.87
KRH44555	Soybean	mitochondrion	80.13	63.78
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	74.15	63.09
EER90213	Sorghum	plastid	73.72	62.73
Zm00001d014391_P008	Maize	plasma membrane	73.29	62.36
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	37.39	34.25
Bra012154.1-P	Field mustard	peroxisome	37.39	34.18
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	36.97	32.52
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	36.32	32.26
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.9	31.58
Bra039185.1-P	Field mustard	cytosol	37.39	13.46
Bra009539.1-P	Field mustard	plasma membrane	22.22	7.93

Protein Annotations

MapMan:24.2.3.10	EnsemblPlantsGene:Bra026089	EnsemblPlants:Bra026089.1	EnsemblPlants:Bra026089.1-P	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	UniProt:M4EBD0	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI000253F12F	:

Description

AT1G15960 (E=8e-239) NRAMP6, ATNRAMP6 | NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter

Coordinates

chrA06:-:6188182..6191828

Molecular Weight (calculated)

50780.4 Da

IEP (calculated)

8.973

GRAVY (calculated)

0.739

Length

468 amino acids

Sequence
(BLAST)

001: MERSEFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH LAEHCRAEYS KVPNFMLWVV AEIAVVALIG TAFALNMLFN
101: IPVWIGVLLT GFSTLILLAL QKYGIRKLEF LIAFLVLTIA VCFLIELHYS KPDPKEVLYG LFVPQLKGNG ATGLAISLLG AMVMPHNLFL HSALVLSRKI
201: PRSVTGIKEA CRYYMIESGL ALTVAFLINV SVISVSGAVC NASDLSPEDQ ASCEDLDLNK ASFLLRNVVG KWSSKLFAIA LLASGQSSTI TGTYAGQYVM
301: QGFLNLTIRP WLRNFLTRCL AIIPRLIVAL IGGSAGAGKL IIIASMVLSF ELPFALVPLL KFTCSKTKMG SHANSLLISS VTWIIGGLIM GINIYYLLSS
401: FIKLILHGHM KLVAVVFLGI LGFSGIAIYL AAIGYLVFRK SRESSTLASS NSQTADTLPR EDIVNMHT

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.