Factsheet for Os06t0676000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90213	Sorghum	plastid	90.91	90.91
TraesCS7D01G451900.1	Wheat	plasma membrane	90.36	90.69
TraesCS7B01G364800.1	Wheat	plasma membrane	90.36	90.69
TraesCS7A01G464300.2	Wheat	plasma membrane	90.18	90.51
HORVU7Hr1G106570.1	Barley	plasma membrane	89.82	90.15
Zm00001d014391_P008	Maize	plasma membrane	89.64	89.64
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	78.0	79.01
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	15.82	75.0
VIT_09s0070g00210.t01	Wine grape	plastid	73.64	74.86
Bra026089.1-P	Field mustard	plasma membrane	63.09	74.15
KRH23641	Soybean	plastid	72.73	73.53
KRH47347	Soybean	plasma membrane	72.73	73.39
CDY63970	Canola	plastid	70.91	73.31
CDY35054	Canola	extracellular	14.36	73.15
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	70.73	73.12
KRH09654	Soybean	plastid	72.55	73.08
CDY33364	Canola	cytosol, peroxisome, plasma membrane	65.09	72.76
AT1G80830.1	Thale cress	plastid	70.36	72.74
AT1G15960.1	Thale cress	plasma membrane	69.45	72.49
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	68.55	72.22
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	69.09	72.11
CDX79348	Canola	cytosol, plasma membrane, vacuole	68.91	72.05
CDX87346	Canola	cytosol, peroxisome, plasma membrane	67.64	71.68
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.64	71.68
CDY39940	Canola	cytosol, peroxisome, plasma membrane	67.45	71.48
CDX67970	Canola	plasma membrane	62.73	71.28
CDY35053	Canola	mitochondrion, plasma membrane	36.73	70.14
KRH44555	Soybean	mitochondrion	73.27	68.54
Bra033988.1-P	Field mustard	plasma membrane	59.27	60.04
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	70.55	58.35
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	56.18	57.43
Os07t0258400-01	Rice	plasma membrane	54.0	57.34
Os01t0503400-03	Rice	plasma membrane	41.64	41.64
Os03t0208500-01	Rice	plasma membrane	34.55	36.26
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	34.55	35.12
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	13.64	34.72
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	7.64	34.15
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	12.91	32.57
Os07t0155600-01	Rice	cytosol, peroxisome, plasma membrane	22.18	9.52
Os03t0700800-01	Rice	plasma membrane	20.0	8.47
Os07t0156732-01	Rice	nucleus	2.0	1.82
Os07t0157401-01	Rice	nucleus	2.0	1.82

Protein Annotations

MapMan:24.2.3.10	EntrezGene:9267339	EMBL:AB775807	EMBL:AK070574	ProteinID:BAD45911.1	ProteinID:BAS99105.1
ProteinID:EAZ38005.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	GO:GO:0055072
HAMAP:MF_00221	InterPro:NRAMP_fam	EnsemblPlantsGene:Os06g0676000	EnsemblPlants:Os06t0676000-01	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	UniProt:Q653V6	UniProt:T2HST0	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI00003B31F0	RefSeq:XP_015644306.1	RefSeq:XP_015644307.1	SEG:seg	:	:

Description

BACTERIOCIDE EFFECT 3Integral membrane protein, Metal ion transport (Os06t0676000-01)

Coordinates

chr6:-:28059549..28065154

Molecular Weight (calculated)

59711.7 Da

IEP (calculated)

8.198

GRAVY (calculated)

0.514

Length

550 amino acids

Sequence
(BLAST)

001: MSGPMQRSSQ PQFISSVERN NQSNGPGTPL IDSIDVDQIV IPEKNSWKNL FSYIGPGFLV SIAYIDPGNF ETDLQAGAQY KYELLWIILI ASCAALIIQS
101: LAARLGVVTG KHLAEHCRAE YPKATNFILW ILAELAVVAC DIPEVIGTAF ALNMLFKIPV WCGVLITGLS TLMLLLLQQY GVRKLEFLIA ILVSLIATCF
201: LVELGYSKPN SSEVVRGLFV PELKGNGATG LAISLLGAMV MPHNLFLHSA LVLSRKVPRS VHGIKEACRF YMIESAFALT IAFLINISII SVSGAVCGSD
301: NLSPEDQMNC SDLDLNKASF LLKNVLGNWS SKLFAVALLA SGQSSTITGT YAGQYVMQGF LDLRMTPWIR NLLTRSLAIL PSLIVSIIGG SSAAGQLIII
401: ASMILSFELP FALVPLLKFT SSRTKMGQHT NSKAISVITW GIGSFIVVIN TYFLITSFVK LLLHNGLSTV SQVFSGIFGF LGMLIYMAAI LYLVFRKNRK
501: ATLPLLEGDS TVRIVGRDTA TEGEGSLGHL PREDISSMQL PQQRTASDLD

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.