Factsheet for Os01t0503400-03

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G195100.1	Wheat	cytosol, peroxisome, plasma membrane	68.18	69.06
TraesCS3D01G206000.1	Wheat	cytosol, peroxisome, plasma membrane	68.0	68.88
TraesCS3B01G230400.1	Wheat	cytosol, peroxisome, plasma membrane	68.0	68.88
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	64.36	62.0
HORVU3Hr1G042440.4	Barley	mitochondrion, plasma membrane	67.45	61.22
Zm00001d007397_P003	Maize	cytosol, peroxisome, plasma membrane	62.55	60.46
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	51.45	52.6
Os07t0258400-01	Rice	plasma membrane	47.27	50.19
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	41.64	41.64
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	7.45	33.33
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	11.27	28.7
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	11.27	28.44
Os03t0208500-01	Rice	plasma membrane	26.73	28.05
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	27.27	27.73
Os07t0155600-01	Rice	cytosol, peroxisome, plasma membrane	19.09	8.2
Os03t0700800-01	Rice	plasma membrane	17.45	7.39
Os07t0156732-01	Rice	nucleus	1.64	1.49
Os07t0157401-01	Rice	nucleus	1.64	1.49

Protein Annotations

MapMan:24.2.3.10	EntrezGene:4324486	EMBL:AK068118	EMBL:AK068641	EMBL:AK072201	EMBL:AK122122
ProteinID:BAD73194.1	ProteinID:BAD73195.1	ProteinID:BAF05053.1	ProteinID:BAS72334.1	ProteinID:BAS72335.1	ProteinID:BAS72336.1
ProteinID:EEE54653.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	GO:GO:0055072
HAMAP:MF_00221	InterPro:NRAMP_fam	EnsemblPlantsGene:Os01g0503400	EnsemblPlants:Os01t0503400-03	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF47	UniProt:Q5QN13	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI000048DEC9
RefSeq:XP_015620405.1	RefSeq:XP_015620414.1	SEG:seg	:	:	:

Description

NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6Similar to (Rice Genome Annotation Project) metal transporter Nramp6. (Os01t0503400-01);Similar to cDNA clone:J013164K10, full insert sequence. (Os01t0503400-02);Similar to OsNramp1 (Integral membrane protein). (Os01t0503400-03);Similar to (Rice Genome Annotation Project) metal transporter Nramp6. (Os01t0503400-04);Similar to cDNA clone:J013164K10, full insert sequence. (Os01t0503400-05)

Coordinates

chr1:-:17454023..17464971

Molecular Weight (calculated)

59060.9 Da

IEP (calculated)

8.245

GRAVY (calculated)

0.615

Length

550 amino acids

Sequence
(BLAST)

001: MEEGAKIGRE HEQQQQQHGR VNGSGRVAAV GGGSGGGGDE IEIEVAAAAG ASPSRQHGGL HGDVQAPTWK RFLAHVGPGF VISIAYLDPS NLQTDLVAGS
101: SHRYSLLWVL LFGFIFVLTV QSLAANLGII TGRHLAELCM GEYPKYVKYC LWLLAELGVI AATIPGVLGT ALAYNMLLHI PFWAGVLACG ACTFLILGLQ
201: GYGARKMEFT ISVLMLVMAT CFFMELGKVN PPAGGVIEGL FIPRPKGDYS TSDAVAMFGS LVVPHNLFLH SSLVLTRKMP YTSKGRKDAS TFFLLENALA
301: LFIALLVNVA IVSISGTICA NNLSFADTST CSSLTLNSTY VLLKNILGKS SSTVYGVALL VSGQSCMVAT SYAGQYIMQG FSGMRKCIIY LVAPCFTLLP
401: SLIICSIGGT LRVHRIINIA AIVLSFVLPF ALIPLIKFSS SCTNIGPYKN ATSIIRIAWI LSLVIIGINI YFFCTSFVAW LVHSDLPRVV NAIISSLVFP
501: FMAAYIAALI YLAFRKVNLS DPFPTNSVSG EIEVQHIQIQ EKQEDLGVHL

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.