Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU83565 | Sorghum | cytosol, peroxisome, plasma membrane | 83.83 | 83.54 |
| TraesCS3A01G195100.1 | Wheat | cytosol, peroxisome, plasma membrane | 59.93 | 62.8 |
| TraesCS3B01G230400.1 | Wheat | cytosol, peroxisome, plasma membrane | 59.93 | 62.8 |
| TraesCS3D01G206000.1 | Wheat | cytosol, peroxisome, plasma membrane | 59.93 | 62.8 |
| Os01t0503400-03 | Rice | plasma membrane | 60.46 | 62.55 |
| HORVU3Hr1G042440.4 | Barley | mitochondrion, plasma membrane | 59.75 | 56.11 |
| Zm00001d019327_P001 | Maize | cytosol, peroxisome, plasma membrane | 42.18 | 46.07 |
| Zm00001d034473_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 6.15 | 44.3 |
| Zm00001d005479_P001 | Maize | plasma membrane | 41.48 | 40.27 |
| Zm00001d014391_P008 | Maize | plasma membrane | 38.14 | 39.45 |
| Zm00001d015133_P001 | Maize | cytosol, peroxisome, plasma membrane | 37.43 | 38.31 |
| Zm00001d033367_P001 | Maize | cytosol, nucleus, plasma membrane | 27.07 | 28.52 |
| Zm00001d048129_P004 | Maize | cytosol, peroxisome, plasma membrane | 24.43 | 26.94 |
| Zm00001d030846_P001 | Maize | plasma membrane | 24.96 | 25.09 |
| Zm00001d033625_P015 | Maize | plasma membrane | 15.82 | 18.91 |
| Zm00001d013492_P001 | Maize | plasma membrane | 15.82 | 16.19 |
| Zm00001d039341_P126 | Maize | plasma membrane | 18.28 | 8.01 |
Protein Annotations
| EntrezGene:103648033 | MapMan:24.2.3.10 | UniProt:A0A1D6F612 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 |
| InterPro:NRAMP_fam | ProteinID:ONM26710.1 | PFAM:PF01566 | PRINTS:PR00447 | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF47 |
| TIGRFAMs:TIGR01197 | TMHMM:TMhelix | UniParc:UPI0004DECB5E | EnsemblPlantsGene:Zm00001d007397 | EnsemblPlants:Zm00001d007397_P003 | EnsemblPlants:Zm00001d007397_T003 |
| SEG:seg | : | : | : | : | : |
Description
Metal transporter Nramp6
Coordinates
chr2:+:230760361..230780878
Molecular Weight (calculated)
60980.1 Da
IEP (calculated)
7.090
GRAVY (calculated)
0.698
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEAGRSWT TDERGDDDGD QLRGTTTATG SRRVAAAAAG ASGEIEMLQT EAAATVVVVG GGASASASVQ QGGGDADDEC GIQQIPIWKR FLTHAGPGFL
101: VSLAYIDPSN VQTDLQAGSS HKFELLWVLF FGFFFVLVIQ SLAAKLGIIT GRNLAQMCMY EYPKLVKYGL WLLIEVGVIA ATIPGVLGTA LAYNILLNIP
201: FLVGVLICGA STFLLLALQI YGVRKIELIG VIFMLLIAIS FFVELSTVNP PMGEVIQGLF IPRLRGVYAV SDAIALFSVL VVPHNLFLHS SLVVSRKISP
301: SPKGFKDTST FFLIENAFAM LLVLLVNVAI VSTTGTICAN NTQLVDNNNA CSGLTLNSAS VLLKNMFGRS TSKIYGLALL ASGQSNTMTT SYSGQYIMQG
401: FSGMRKCIVF IIAPCFTVIP SLIICSVAGA PHVRQLINVS AIILAFVLPF SLVPLLKFSS SCAVKVPYKN SACIVQVAWI LSIVIMGINI YFFCNSFISW
501: LVHSELPRIV NVIISTLVFP FMAAYIAALI YLAFRKVNAA GIFPSVSAST GTEVEAWRQD GNIDDIGVH
101: VSLAYIDPSN VQTDLQAGSS HKFELLWVLF FGFFFVLVIQ SLAAKLGIIT GRNLAQMCMY EYPKLVKYGL WLLIEVGVIA ATIPGVLGTA LAYNILLNIP
201: FLVGVLICGA STFLLLALQI YGVRKIELIG VIFMLLIAIS FFVELSTVNP PMGEVIQGLF IPRLRGVYAV SDAIALFSVL VVPHNLFLHS SLVVSRKISP
301: SPKGFKDTST FFLIENAFAM LLVLLVNVAI VSTTGTICAN NTQLVDNNNA CSGLTLNSAS VLLKNMFGRS TSKIYGLALL ASGQSNTMTT SYSGQYIMQG
401: FSGMRKCIVF IIAPCFTVIP SLIICSVAGA PHVRQLINVS AIILAFVLPF SLVPLLKFSS SCAVKVPYKN SACIVQVAWI LSIVIMGINI YFFCNSFISW
501: LVHSELPRIV NVIISTLVFP FMAAYIAALI YLAFRKVNAA GIFPSVSAST GTEVEAWRQD GNIDDIGVH
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.