Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005479_P001 | Maize | plasma membrane | 97.47 | 13.14 |
| Zm00001d019327_P001 | Maize | cytosol, peroxisome, plasma membrane | 74.68 | 11.32 |
| Zm00001d014391_P008 | Maize | plasma membrane | 64.56 | 9.27 |
| Zm00001d015133_P001 | Maize | cytosol, peroxisome, plasma membrane | 54.43 | 7.73 |
| Zm00001d007397_P003 | Maize | cytosol, peroxisome, plasma membrane | 44.3 | 6.15 |
| Zm00001d033367_P001 | Maize | cytosol, nucleus, plasma membrane | 36.71 | 5.37 |
| Zm00001d048129_P004 | Maize | cytosol, peroxisome, plasma membrane | 34.18 | 5.23 |
| Zm00001d030846_P001 | Maize | plasma membrane | 32.91 | 4.59 |
| Zm00001d033625_P015 | Maize | plasma membrane | 20.25 | 3.36 |
| Zm00001d013492_P001 | Maize | plasma membrane | 18.99 | 2.7 |
| Zm00001d039341_P126 | Maize | plasma membrane | 16.46 | 1.0 |
Protein Annotations
| EnsemblPlants:Zm00001d034473_P001 | EnsemblPlants:Zm00001d034473_T001 | EnsemblPlantsGene:Zm00001d034473 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 |
| InterPro:NRAMP_fam | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF41 | PFAM:PF01566 | ProteinID:ONM10347.1 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI000845258E | UniProt:A0A1D6L7X1 | MapMan:35.1 | : | : |
Description
Metal transporter Nramp6
Coordinates
chr1:-:293997657..293998136
Molecular Weight (calculated)
8126.9 Da
IEP (calculated)
4.020
GRAVY (calculated)
0.878
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MFVALLINIC IISVSGTVCN SSNVSPDDSA KCSDITLDSS SFLLRNVLGN ISAVVYGVAL LACGISSSIT GTYAGQYIM
001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD
Arabidopsis Description
NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.