Factsheet for Zm00001d005479_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034473_P001	Maize	endoplasmic reticulum, extracellular, vacuole	13.14	97.47
EER96161	Sorghum	cytosol, plasma membrane, vacuole	81.57	91.05
Os07t0258400-01	Rice	plasma membrane	68.09	77.03
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	65.87	74.95
TraesCS7A01G327300.1	Wheat	plasma membrane	66.89	74.67
TraesCS7D01G324000.1	Wheat	plasma membrane	66.89	74.67
TraesCS7B01G227900.1	Wheat	plasma membrane	66.72	74.48
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	51.02	69.05
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	59.56	66.99
VIT_18s0001g02120.t01	Wine grape	plasma membrane	59.56	64.39
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	58.19	64.34
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	57.85	63.96
KRH53274	Soybean	plastid	58.53	63.05
GSMUA_Achr11P...	Banana	cytosol	55.29	62.31
VIT_18s0001g02140.t01	Wine grape	plasma membrane	50.68	60.12
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	56.83	60.11
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	49.83	57.25
Zm00001d014391_P008	Maize	plasma membrane	48.46	51.64
Zm00001d015133_P001	Maize	cytosol, peroxisome, plasma membrane	45.22	47.66
VIT_18s0001g02130.t01	Wine grape	plastid	15.36	44.34
Zm00001d007397_P003	Maize	cytosol, peroxisome, plasma membrane	40.27	41.48
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	30.89	35.08
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	30.72	33.33
Zm00001d030846_P001	Maize	plasma membrane	30.89	31.98
Zm00001d033625_P015	Maize	plasma membrane	17.24	21.22
Zm00001d013492_P001	Maize	plasma membrane	17.06	17.99
Zm00001d039341_P126	Maize	plasma membrane	19.28	8.7

Protein Annotations

MapMan:24.2.3.10	UniProt:A0A1D6EN96	GO:GO:0003674	GO:GO:0005215	GO:GO:0005381	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0034755
GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	ProteinID:ONM21278.1	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF41	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0008429055	EnsemblPlantsGene:Zm00001d005479
EnsemblPlants:Zm00001d005479_P001	EnsemblPlants:Zm00001d005479_T001	SEG:seg	:	:	:

Description

Metal transporter Nramp6

Coordinates

chr2:+:175573813..175580218

Molecular Weight (calculated)

63203.7 Da

IEP (calculated)

8.161

GRAVY (calculated)

0.739

Length

586 amino acids

Sequence
(BLAST)

001: MDAAQVPAAV VVDVGALTGP IGSEAPAAPK FRGQHSAKLG RALRMFVEMP TAIAHSSRIP IAGYMNMYDA KGPAWKRFLY HVGPGFMVCL AYLDPGNLGT
101: DLQAGADHRY ELLWVTLIGL IFALIIQSLS ANLGVVTGRH LAELCKTEYP AWVRICLWLL AELAVIAADI PEVIGTAFAF NILFHVPLWV GVLITGSSTL
201: LLLGLQKYGV RKLELLVGLL VFVMAACFFI EMSIVKPPAE EVIHGLFIPS LSGPGATGDT IALLGALVMP HNLFLHSALV LSRNTPSSVR GINGTSVRSF
301: AFQDACRFFL LESGVAMFVA LIINICIISV SGTVCNSSNV SPDDSAKCSD ITLDSSSFLL RNVLGNSSAV VYGVALLACG ISSSITGTYA GQYIMQIVIL
401: EARFACVWLL AQGFLDIKMR QWLRNLMTRS IAIIPSLIVA IIGGSSGAGR LVIIASMILS FELPFALIPL LKFSSSSSTM GQHKNSIFII GFSWILGFVI
501: IGINIYFLSS KFVGWILHNS LQIYANILIG IVVFPLMLIY VCAVIYLTLR KETIKFVACG ELQTIETDKS KLANGSNMEE KKDQLV

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.