Factsheet for VIT_18s0001g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02140.t01	Wine grape	plasma membrane	73.25	80.36
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	63.28	79.21
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	70.48	71.4
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	70.85	71.38
GSMUA_Achr11P...	Banana	cytosol	68.45	71.35
TraesCS4D01G299400.1	Wheat	plasma membrane	69.74	70.26
TraesCS4A01G004400.1	Wheat	plasma membrane	69.74	70.0
TraesCS4B01G300600.1	Wheat	plasma membrane	69.56	69.81
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	71.22	69.68
HORVU4Hr1G077510.1	Barley	plasma membrane	69.56	69.56
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	64.76	68.16
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	65.31	67.95
Os07t0258400-01	Rice	plasma membrane	64.39	67.37
TraesCS7A01G327300.1	Wheat	plasma membrane	64.76	66.86
TraesCS7B01G227900.1	Wheat	plasma membrane	64.58	66.67
TraesCS7D01G324000.1	Wheat	plasma membrane	64.21	66.29
EER96161	Sorghum	cytosol, plasma membrane, vacuole	63.84	65.9
VIT_18s0001g02130.t01	Wine grape	plastid	23.62	63.05
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	58.49	62.16
Zm00001d005479_P001	Maize	plasma membrane	64.39	59.56
VIT_09s0070g00210.t01	Wine grape	plastid	56.27	56.38
VIT_07s0129g00620.t01	Wine grape	plasma membrane	38.19	39.81
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	36.72	37.13
VIT_08s0040g01730.t01	Wine grape	plasma membrane	24.17	9.94

Protein Annotations

EntrezGene:100266052	wikigene:100266052	MapMan:24.2.3.10	ProteinID:CBI18985	ProteinID:CBI18985.3	UniProt:E0CR31
EMBL:FN595227	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EntrezGene:LOC100266052	wikigene:LOC100266052
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI000198534C	ArrayExpress:VIT_18s0001g02120	EnsemblPlantsGene:VIT_18s0001g02120	EnsemblPlants:VIT_18s0001g02120.t01
RefSeq:XP_002284556	RefSeq:XP_002284556.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:2513739..2517442

Molecular Weight (calculated)

58734.7 Da

IEP (calculated)

8.137

GRAVY (calculated)

0.562

Length

542 amino acids

Sequence
(BLAST)

001: MGSLEHQVGN TGSKRIAALD TPPPPSRSHA AHHLDLDDQK PGWRKFLAFV GPGFLVSLAY LDPGNLETDL QAGANHGFEL LWVVLIGLIF ALIIQSLAAN
101: LGVSTGKHLS ELCKAEYPII VKYCLWLLAE IAVIAADIPE VIGTAFALNI LFKVPVWAGV LFTGFSTLLL LGLQRYGVRK LELLIAVLVF IMAGCFFGEM
201: SYVKPPATGV LKGMFIPKLK GQGATGDAIA LLGALVMPHN LFLHSALVLS RKVPNSVRGI NEACRYFLIE SGLALFVAFL INVAVVSVSG TVCSADNLSQ
301: ENLDQCNDLN LNSASFLLKN VLGGSSKVVY AIALFASGQS STITGTYAGQ FIMQGFLDIK MRKWLRNLMT RSIAITPSLI VSIIGGSAGA GRLIIIASMI
401: LSFELPFALI PLLKFSSSNT KMGPHKNSIY IIVISWILGF GIIGINIYYL STSFVGWLLH NNLPKVGNVF IGIIVFPLMA IYILSVIYLT TRKDTVVTFI
501: EPEKNDPNVQ NHMENGFDQT DGVFELGHVP YREDLADIPL PK

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.