Factsheet for TraesCS4D01G299400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G004400.1	Wheat	plasma membrane	98.51	98.15
TraesCS4B01G300600.1	Wheat	plasma membrane	98.33	97.96
HORVU4Hr1G077510.1	Barley	plasma membrane	97.77	97.05
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	86.8	87.29
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	80.67	83.3
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	83.09	83.09
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	62.08	77.14
TraesCS7D01G324000.1	Wheat	plasma membrane	73.79	75.62
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	70.63	71.7
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	70.45	71.51
KRH53274	Soybean	plastid	72.12	71.32
VIT_18s0001g02120.t01	Wine grape	plasma membrane	70.26	69.74
GSMUA_Achr11P...	Banana	cytosol	67.29	69.62
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	70.45	68.41
VIT_18s0001g02140.t01	Wine grape	plasma membrane	61.15	66.6
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	56.13	59.22
TraesCS7D01G451900.1	Wheat	plasma membrane	58.36	57.3
TraesCS3D01G206000.1	Wheat	cytosol, peroxisome, plasma membrane	51.12	50.64
VIT_18s0001g02130.t01	Wine grape	plastid	18.77	49.75
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	34.2	35.45
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	34.01	34.53
TraesCS5D01G084900.1	Wheat	plasma membrane	34.2	33.64
TraesCS5D01G166000.1	Wheat	plasma membrane	21.56	9.35
TraesCS4D01G036000.3	Wheat	plasma membrane	18.96	8.41

Protein Annotations

EnsemblPlants:TraesCS4D01G299400.1	EnsemblPlantsGene:TraesCS4D01G299400	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	PFAM:PF01566	PRINTS:PR00447	SEG:seg	TIGRFAMs:TIGR01197
TMHMM:TMhelix	MapMan:24.2.3.10	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:468418135..468422441

Molecular Weight (calculated)

58380.1 Da

IEP (calculated)

6.920

GRAVY (calculated)

0.542

Length

538 amino acids

Sequence
(BLAST)

001: MEIEREAPGG ERGRSWRAEQ DVQDGKKFED GDETLVKEPA WKRFLSHVGP GFMVSLAYLD PGNLETDLQA GANHRYELLW VILIGLIFAL IIQSLAANLG
101: VVTGKHLAEI CKSEYPKPVM ICLWLLAEVA VIAADIPEVI GTAFAFYLLF RIPVWIGVLI TGSSTLLLLG LQRYGVRKLE FLISMLVFVM AACFFGELSI
201: VKPPAKEVLK GLFIPKLKGN GATGDAIALL GALVMPHNLF LHSALVLSRK TPSSVRGIKD ACRFFLYESG FALFVALLIN IAVISVSGTV CFGENLSAED
301: IDKCSDLSLD NSSFLLKNVL GRSSSIVYGV ALLASGQSST ITGTYAGQYI MQGFLDIKMK TWLRNLMTRC IAIAPSLVVS IIGGSNGAGR LIIIASMILS
401: FELPFALIPL LKFSSSSSKM GPHKNSIYII VFSWTLGLML IGINVYFLST SFMGWLIHSS LPTYAKVLVG VVVCPLMIVY LIAVVYLTFR KDTVVTFVAD
501: SCKADAEKAA GGSGEDDDEP VPYREDLADI PLPAHSRG

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.