CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	88.41	90.79
TraesCS4D01G299400.1	Wheat	plasma membrane	87.29	86.8
TraesCS4A01G004400.1	Wheat	plasma membrane	87.1	86.3
TraesCS4B01G300600.1	Wheat	plasma membrane	86.92	86.11
HORVU4Hr1G077510.1	Barley	plasma membrane	87.1	85.98
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	86.36	85.87
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	62.24	76.91
EER96161	Sorghum	cytosol, plasma membrane, vacuole	72.15	73.52
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	72.34	73.02
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	71.96	72.64
VIT_18s0001g02120.t01	Wine grape	plasma membrane	71.4	70.48
KRH53274	Soybean	plastid	71.59	70.4
GSMUA_Achr11P...	Banana	cytosol	68.04	70.0
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	71.59	69.13
VIT_18s0001g02140.t01	Wine grape	plasma membrane	61.87	67.0
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	56.64	59.41
EER90213	Sorghum	plastid	59.07	57.45
KXG29392	Sorghum	plasma membrane	58.13	56.86
VIT_18s0001g02130.t01	Wine grape	plastid	18.69	49.26
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	46.73	43.78
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	32.52	33.72
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	34.02	33.33
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	33.64	33.09
KXG37779	Sorghum	plasma membrane	19.07	21.89
OQU91151	Sorghum	plasma membrane	17.38	19.14
EES02232	Sorghum	plasma membrane	21.87	9.2
KXG37781	Sorghum	plasma membrane	21.12	9.14

Protein Annotations

MapMan:24.2.3.10	EntrezGene:8054434	UniProt:A0A1W0W334	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
HAMAP:MF_00221	InterPro:NRAMP_fam	EnsemblPlants:OQU88782	ProteinID:OQU88782	ProteinID:OQU88782.1	PFAM:PF01566
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	EnsemblPlantsGene:SORBI_3002G095400	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI0001A83E5E	RefSeq:XP_002461772.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:9859612..9865090

Molecular Weight (calculated)

58387.3 Da

IEP (calculated)

7.496

GRAVY (calculated)

0.569

Length

535 amino acids

Sequence
(BLAST)

001: MEIEREAPGN DKARSWRANV AQEDSKTKLD GGDQLMKEPA WKRFLAHVGP GFMVSLAYLD PGNLETDLQA GANHRYELLW VILIGLIFAL IIQSLAANLG
101: VVTGRHLAEI CKSEYPKFVR ICLWILAEVA VIAADIPEVI GTAFAFNLLF HIPVWVGVLI TGSSTLLLLG LQRYGVRKLE FLISMLVFVM AACFFGELSI
201: VKPPAVEVIK GLFIPRLKGD GATADAIALL GALVMPHNLF LHSALVLSRK TPSSVRGIKD ACRFFLYESG FALFVALLIN IAVISVSGTV CFSGNLSPED
301: ADKCSDLSLD SSSFLLKNVL GRSSSIVYGV ALLASGQSST ITGTYSGQYI MQGFLDIRMK KWLRNLMTRC IAIAPSLVVS IIGGSSGAGR LIIIASMILS
401: FELPFALIPL LKFSSSRSKM GPHKNSIYII VFSWLLGLMI IGINMYFLST SFVGWLIHNS LPIYANVLVG LVIFPLMLIY VLAVIYLTFR KDTVVTFVAD
501: SNQLDNAEKA KAAGEEEDDQ PVPFRQDLAD IPLPE

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.