CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014391_P008	Maize	plasma membrane	97.45	97.45
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	90.91	90.91
TraesCS7D01G451900.1	Wheat	plasma membrane	89.45	89.78
TraesCS7B01G364800.1	Wheat	plasma membrane	89.27	89.6
TraesCS7A01G464300.2	Wheat	plasma membrane	89.27	89.6
HORVU7Hr1G106570.1	Barley	plasma membrane	89.27	89.6
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	77.45	78.45
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	15.82	75.0
VIT_09s0070g00210.t01	Wine grape	plastid	73.27	74.49
CDY35054	Canola	extracellular	14.55	74.07
Bra026089.1-P	Field mustard	plasma membrane	62.73	73.72
KRH47347	Soybean	plasma membrane	72.91	73.58
CDY63970	Canola	plastid	70.91	73.31
CDY33364	Canola	cytosol, peroxisome, plasma membrane	65.45	73.17
AT1G15960.1	Thale cress	plasma membrane	70.0	73.06
AT1G80830.1	Thale cress	plastid	70.55	72.93
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	70.55	72.93
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	69.82	72.87
KRH23641	Soybean	plastid	72.0	72.79
KRH09654	Soybean	plastid	72.18	72.71
CDX79348	Canola	cytosol, plasma membrane, vacuole	69.27	72.43
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	68.36	72.03
CDX67970	Canola	plasma membrane	63.09	71.69
CDX87346	Canola	cytosol, peroxisome, plasma membrane	67.64	71.68
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.64	71.68
CDY39940	Canola	cytosol, peroxisome, plasma membrane	67.45	71.48
CDY35053	Canola	mitochondrion, plasma membrane	36.0	68.75
KRH44555	Soybean	mitochondrion	73.09	68.37
Bra033988.1-P	Field mustard	plasma membrane	59.64	60.41
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	57.45	59.07
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	70.55	58.35
EER96161	Sorghum	cytosol, plasma membrane, vacuole	52.55	55.05
KXG29392	Sorghum	plasma membrane	46.55	46.8
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	38.73	37.3
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	34.91	37.21
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	34.73	34.98
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	34.36	34.74
KXG37779	Sorghum	plasma membrane	17.27	20.39
OQU91151	Sorghum	plasma membrane	16.36	18.52
EES02232	Sorghum	plasma membrane	20.55	8.88
KXG37781	Sorghum	plasma membrane	19.82	8.82

Protein Annotations

MapMan:24.2.3.10	EntrezGene:8083203	UniProt:C5Z7T5	EnsemblPlants:EER90213	ProteinID:EER90213	ProteinID:EER90213.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	EnsemblPlantsGene:SORBI_3010G227800	unigene:Sbi.20987	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI0001A89657	RefSeq:XP_002438846.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:57071825..57077620

Molecular Weight (calculated)

59496.4 Da

IEP (calculated)

8.250

GRAVY (calculated)

0.578

Length

550 amino acids

Sequence
(BLAST)

001: MSGPSQCSSQ PQFMTSVGRS NRSNGPGTPL IESIDVDQIV IPEKNSWKNL FSYIGPGFLV SIAYIDPGNF ETDLQAGAQY KYELLWIILV ASCAALIIQS
101: LAARLGVVTG KHLAEHCRAE YPKVTNFVLW ILAELAVVAC DIPEVIGTAF ALNMLFRIPV WCGVLITGLS TLMLLLLQQY GVRKLEFLIA FLVFLIATCF
201: LVELGYSKPN ASEVVRGLFV PELKGNGATG LAISLLGAMV MPHNLFLHSA LVLSRKVPRS VHGIKEACRF YTIESAFALT IAFLINISII SVSGVVCGSG
301: NLNPEDQVNC SDLDLNKASF LLKNVLGNWS SKLFAVALLA SGQSSTITGT YAGQYVMQGF LDLRMKPWIR NLVTRSLAIL PSLIVSIIGG SSAAGQLIII
401: ASMILSFELP FALVPLLKFT SSKTKMGQHT NSIFTSVLTW VIGSFIVVIN TYFLITSFVK LLLHSGLSTV SQVFSGIFGF LGMLIYIVAI LYLVFRRNRK
501: STQPLLESDA ELAVSGSSAG AGAECSLGHL PREDISSMQL PQQRSASDLD

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.