Factsheet for Bra033988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35054	Canola	extracellular	18.6	93.52
Bra026089.1-P	Field mustard	plasma membrane	71.64	83.12
CDY35053	Canola	mitochondrion, plasma membrane	39.23	73.96
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	15.65	73.28
AT1G15960.1	Thale cress	plasma membrane	69.98	72.11
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	67.59	69.64
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	67.4	68.8
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.75	68.79
VIT_09s0070g00210.t01	Wine grape	plastid	63.72	63.96
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	61.33	63.79
KRH47347	Soybean	plasma membrane	63.9	63.67
KRH23641	Soybean	plastid	63.72	63.6
KRH09654	Soybean	plastid	63.9	63.55
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	62.62	62.62
TraesCS7D01G451900.1	Wheat	plasma membrane	61.33	60.77
TraesCS7A01G464300.2	Wheat	plasma membrane	61.14	60.58
TraesCS7B01G364800.1	Wheat	plasma membrane	60.96	60.4
HORVU7Hr1G106570.1	Barley	plasma membrane	60.77	60.22
Zm00001d014391_P008	Maize	plasma membrane	60.59	59.82
EER90213	Sorghum	plastid	60.41	59.64
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	60.04	59.27
KRH44555	Soybean	mitochondrion	63.9	59.01
Bra012154.1-P	Field mustard	peroxisome	32.04	33.98
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	31.68	33.66
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	30.76	31.69
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	30.57	31.2
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.39	31.02
Bra039185.1-P	Field mustard	cytosol	31.86	13.31
Bra009539.1-P	Field mustard	plasma membrane	18.78	7.78

Protein Annotations

MapMan:24.2.3.10	EnsemblPlantsGene:Bra033988	EnsemblPlants:Bra033988.1	EnsemblPlants:Bra033988.1-P	InterPro:DUF212	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	UniProt:M4EYU6	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566
PFAM:PF02681	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI00025460D3	SEG:seg	:	:	:	:

Description

AT1G15960 (E=6e-198) NRAMP6, ATNRAMP6 | NRAMP6; inorganic anion transmembrane transporter/ metal ion transmembrane transporter

Coordinates

chrA02:-:10410837..10414738

Molecular Weight (calculated)

58620.6 Da

IEP (calculated)

8.588

GRAVY (calculated)

0.605

Length

543 amino acids

Sequence
(BLAST)

001: MEESSSPSSH YFSIFTNYPL LSAVLAFTIA QFIKFFTTWS NGEFLVSIAY IDPGNFETDL QSGAQYKYEL LWIILVASCA ALVIQSLAAN LGVVTGKHLA
101: EHCRAEYSKV PNFMLWVVAE IAVVALIGTA FALNMLFNIP VWIGVLLTGF STLILLALQK YGIRKLEFLI AFLVLTIAVC FLIELHYSKP DPKEVLYGLF
201: VPQLKGNGAT GLAISLLGAM VMPHNLFLHS ALVLSRKIPR SVTGIKEACR YYMIESGLAL TVAFLINVSV ISVSGAVCNA SDLSPEDQAS CEDLDLNKAS
301: FLLRNVVGKW SSKLFAIALL ASGQSSTITG TYAGQYVMQG FLNLTIRPWL RNFLTRCLAI IPRLIVALIG GSAGAGKLII IASMVLSFEL PFALVPLLKF
401: TCSKTKMGSH ANSLLDTMCL YKEKRWDLKR LVGSGGMPSS HSATVTALAM AVGLQEGFGG SLFAMAFILT SIGMYDATGV RLHAGRQAGV LNQIVYELPS
501: EHPLAESRPL RELLGHTPPQ VIVGGILGTA TAVVGYLVNL TAK

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.