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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026089.1-P Field mustard plasma membrane 67.24 75.0
CDY33364 Canola cytosol, peroxisome, plasma membrane 70.11 74.39
AT1G15960.1 Thale cress plasma membrane 74.9 74.19
VIT_09s0070g00210.t01 Wine grape plastid 76.25 73.57
CDX79348 Canola cytosol, plasma membrane, vacuole 73.95 73.38
Bra003587.1-P Field mustard cytosol, plastid, vacuole 73.56 72.87
Bra035149.1-P Field mustard cytosol, peroxisome, plasma membrane 72.41 72.83
CDX87346 Canola cytosol, peroxisome, plasma membrane 72.41 72.83
CDY39940 Canola cytosol, peroxisome, plasma membrane 72.41 72.83
KRH23641 Soybean plastid 75.48 72.43
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 16.09 72.41
AT1G80830.1 Thale cress plastid 73.75 72.37
CDY35054 Canola extracellular 14.94 72.22
CDY35053 Canola mitochondrion, plasma membrane 39.85 72.22
CDY63970 Canola plastid 73.56 72.18
Bra008437.1-P Field mustard cytosol, peroxisome, plasma membrane, plastid 73.56 72.18
KRH09654 Soybean plastid 75.29 71.98
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 74.52 71.64
KRH47347 Soybean plasma membrane 74.33 71.19
CDX67970 Canola plasma membrane 65.9 71.07
TraesCS7A01G464300.2 Wheat plasma membrane 72.61 69.16
TraesCS7D01G451900.1 Wheat plasma membrane 72.41 68.98
TraesCS7B01G364800.1 Wheat plasma membrane 72.41 68.98
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 72.22 68.55
HORVU7Hr1G106570.1 Barley plasma membrane 71.84 68.43
EER90213 Sorghum plastid 72.03 68.36
Zm00001d014391_P008 Maize plasma membrane 71.46 67.82
KRH44555 Soybean mitochondrion 73.95 65.65
Bra033988.1-P Field mustard plasma membrane 63.79 61.33
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 73.56 57.74
Solyc11g018530.1.1 Tomato cytosol, peroxisome, plasma membrane 55.94 55.09
Solyc02g092800.2.1 Tomato cytosol, peroxisome, plasma membrane 37.36 38.31
Solyc04g078250.2.1 Tomato cytosol, nucleus, plasma membrane 35.44 35.65
Solyc04g078230.1.1 Tomato cytosol, extracellular, plastid 8.24 26.38
Solyc04g078240.1.1 Tomato cytosol 7.66 24.84
Solyc09g005490.1.1 Tomato extracellular 5.75 23.62
Solyc09g007870.2.1 Tomato plastid 21.84 8.66
Solyc09g005540.1.1 Tomato cytosol, nucleus, vacuole 8.62 7.31
Protein Annotations
EnsemblPlants:Solyc03g116900.2.1EnsemblPlantsGene:Solyc03g116900.2GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0030001GO:GO:0046873HAMAP:MF_00221
InterPro:NRAMP_famPANTHER:PTHR11706PANTHER:PTHR11706:SF38PFAM:PF01566PRINTS:PR00447SEG:seg
TIGRFAMs:TIGR01197TMHMM:TMhelixUniParc:UPI0002769108UniProt:K4BLJ2MapMan:24.2.3.10:
Description
No Description!
Coordinates
chr3:+:66166411..66174887
Molecular Weight (calculated)
56710.3 Da
IEP (calculated)
8.767
GRAVY (calculated)
0.509
Length
522 amino acids
Sequence
(BLAST)
001: MTSPANKNHS NQPLIDDIEY DQIVVPDKKS WKNIFSYIGP GFLVSIAYID PGNFQTDLQA GAQYKYGLLW IILLASFAAL VIQSLAANLG VVTGKHLAEH
101: CRKEYAKVPN FILWVIAEIA IVACDIPEVI GTAFALNMLF KIPIWCGVLI TGLSTLTLLL LQQYGVRTLE FFIAFLVLTV AVCFFVELGY AKPDSSEVLQ
201: GLFVPQLKGT GATKLAISLL GAMVMPHNLF LHSALVLSRK IPRSVNGIKE ACRYYLIESG LALMVAFLIN VSVISVTGAV CNSPSMSPDD QEKCQDLDLN
301: KASFLLKNVL GNWSSKLFAI ALLASGQSST ITGTYAGQYV MQGFLDLRLK PWIRNFLTRC LAIVPSLVVS LIGGSGGAGN LIIIASMILS FELPFALIPL
401: LKFTSSKTKM GSHANPVAVS AATWVIGTLI MGINIYYLAE KLITSIKDGH LGKASKVLCG LLGASCLLGY LSSILYLAFR RNKEGTHLLA LTGQEGLQVS
501: ELNNLPREDI LRMQLPQQRT TN
Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.