Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67330.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT5G67330.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064287 | Potato | cytosol, nucleus, plasma membrane | 99.02 | 97.86 |
| KRH77065 | Soybean | plasma membrane | 74.26 | 74.56 |
| KRH28413 | Soybean | plasma membrane | 74.07 | 74.51 |
| VIT_07s0129g00620.t01 | Wine grape | plasma membrane | 75.83 | 74.23 |
| AT2G23150.1 | Thale cress | plasma membrane | 73.67 | 73.67 |
| KRH58028 | Soybean | plasma membrane | 73.87 | 72.87 |
| KRH04493 | Soybean | peroxisome | 73.08 | 72.09 |
| Bra000573.1-P | Field mustard | golgi, peroxisome, plasma membrane | 72.3 | 72.02 |
| AT5G67330.1 | Thale cress | plasma membrane | 72.1 | 71.68 |
| CDY57441 | Canola | peroxisome | 71.91 | 71.48 |
| Bra012154.1-P | Field mustard | peroxisome | 71.91 | 71.48 |
| CDX76871 | Canola | cytosol, peroxisome, plasma membrane | 72.1 | 71.26 |
| CDY21478 | Canola | plasma membrane | 69.94 | 70.78 |
| CDX83202 | Canola | plasma membrane | 70.33 | 66.54 |
| Solyc04g078250.2.1 | Tomato | cytosol, nucleus, plasma membrane | 67.19 | 65.9 |
| Solyc04g078230.1.1 | Tomato | cytosol, extracellular, plastid | 18.66 | 58.28 |
| CDY12837 | Canola | nucleus | 71.91 | 54.95 |
| Solyc04g078240.1.1 | Tomato | cytosol | 15.32 | 48.45 |
| Solyc11g018530.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 39.1 | 37.55 |
| Solyc03g116900.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 38.31 | 37.36 |
| Bra039185.1-P | Field mustard | cytosol | 71.71 | 28.08 |
| Solyc09g005490.1.1 | Tomato | extracellular | 5.5 | 22.05 |
| Solyc09g007870.2.1 | Tomato | plastid | 19.84 | 7.67 |
| Solyc09g005540.1.1 | Tomato | cytosol, nucleus, vacuole | 7.27 | 6.01 |
Protein Annotations
| MapMan:24.2.3.10 | EMBL:AY196092 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 | HAMAP:MF_00221 |
| InterPro:NRAMP_fam | PFAM:PF01566 | PRINTS:PR00447 | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF46 | UniProt:Q84LR0 |
| EnsemblPlantsGene:Solyc02g092800.2 | EnsemblPlants:Solyc02g092800.2.1 | TIGRFAMs:TIGR01197 | TMHMM:TMhelix | UniParc:UPI0000191BBF | SEG:seg |
Description
Metal transporter [Source:UniProtKB/TrEMBL;Acc:Q84LR0]
Coordinates
chr2:-:53765305..53769121
Molecular Weight (calculated)
56151.2 Da
IEP (calculated)
5.685
GRAVY (calculated)
0.581
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLNDEEEHH QLLADRLLEE ESAYEYSDKV HIIGVDDDDD FTKTPPFSWK KLWAFTGPGF LMSIAFLDPG NLEGDLQAGA IAGYSLLWLL FWATAMGLLV
101: QLLAARLGVA TSRHLAELCR DEYPKWARLL LWVMTELALI GADIQEVIGS AIAIKILSRG FLPLWSGVVI TALDCFVFLF LENYGVRKLE ALFAVLIAVM
201: AVSFAWMFGE TKPNGVELLV GVVVPKLSSK TIKQAVGIVG CVIMPHNVFL HSALVQSRDI DNRKIGRVRE ALNYYSIEST IALAISFMIN LFVTTVFAKS
301: FYGSEIANSI GLENAGQYLQ DKYGGGSFPI LYIWAIGLLA AGQSSTITGT YAGQFIMGGF LHMRLKKWQR ALITRSCAIV PTLIVALAFD TSEKSLDVLN
401: EWLNVLQCVQ IPFALIPLLC LVSREEIMGV FKIGSTMKVI SWLVAVLVML INGYLLMDSL SSAVSGMLFT SVVVAFTGAY IAFIVYLISR GITFPNWFVK
501: NKSISSIDN
101: QLLAARLGVA TSRHLAELCR DEYPKWARLL LWVMTELALI GADIQEVIGS AIAIKILSRG FLPLWSGVVI TALDCFVFLF LENYGVRKLE ALFAVLIAVM
201: AVSFAWMFGE TKPNGVELLV GVVVPKLSSK TIKQAVGIVG CVIMPHNVFL HSALVQSRDI DNRKIGRVRE ALNYYSIEST IALAISFMIN LFVTTVFAKS
301: FYGSEIANSI GLENAGQYLQ DKYGGGSFPI LYIWAIGLLA AGQSSTITGT YAGQFIMGGF LHMRLKKWQR ALITRSCAIV PTLIVALAFD TSEKSLDVLN
401: EWLNVLQCVQ IPFALIPLLC LVSREEIMGV FKIGSTMKVI SWLVAVLVML INGYLLMDSL SSAVSGMLFT SVVVAFTGAY IAFIVYLISR GITFPNWFVK
501: NKSISSIDN
001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH
Arabidopsis Description
NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.