Factsheet for Bra012154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 1
peroxisome 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	Bra012567.1-P	AT4G19030.1	21798944
AT5G67330.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57441	Canola	peroxisome	100.0	100.0
AT5G67330.1	Thale cress	plasma membrane	95.12	95.12
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	75.78	75.93
KRH28413	Soybean	plasma membrane	73.63	74.51
KRH77065	Soybean	plasma membrane	73.63	74.36
KRH04493	Soybean	peroxisome	73.05	72.48
KRH58028	Soybean	plasma membrane	72.66	72.09
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.48	71.91
VIT_07s0129g00620.t01	Wine grape	plasma membrane	72.46	71.35
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	71.48	71.07
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.34	67.36
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.16	65.6
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	63.28	60.9
Bra026089.1-P	Field mustard	plasma membrane	34.18	37.39
Bra035149.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.52	36.03
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	36.52	35.15
Bra003587.1-P	Field mustard	cytosol, plastid, vacuole	35.55	34.54
Bra033988.1-P	Field mustard	plasma membrane	33.98	32.04
Bra039185.1-P	Field mustard	cytosol	75.2	29.62
Bra009539.1-P	Field mustard	plasma membrane	19.73	7.7

Protein Annotations

MapMan:24.2.3.10	EnsemblPlantsGene:Bra012154	EnsemblPlants:Bra012154.1	EnsemblPlants:Bra012154.1-P	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0006810	GO:GO:0006828	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009987	GO:GO:0010039	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0042742	GO:GO:0046873	GO:GO:0055072	GO:GO:2000379	UniProt:M4D6P5
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00025416E9	SEG:seg	:	:

Description

AT5G67330 (E=6e-269) ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter

Coordinates

chrA07:-:9679505..9681493

Molecular Weight (calculated)

56176.2 Da

IEP (calculated)

5.020

GRAVY (calculated)

0.579

Length

512 amino acids

Sequence
(BLAST)

001: MSEPERARPL LASEERAYED TEKVHIVGVD EEDGADYDDE LGNSPRFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSRKV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKA
301: FYGTDIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAIV PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATSVALL VPVIIFAVAY VVFVLYLISR GLTYTTPWQL
501: VSSQKVTERD DE

Best Arabidopsis Sequence Match ( AT5G67330.1 )
(BLAST)

001: MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS
301: FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY VVFVLYLISR GLTYTPWQLV
501: ASSHKEPQRD DE

Arabidopsis Description

NRAMP4Metal transporter Nramp4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN18]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.