CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	KRH11076	AT4G19030.1	21798944
AT5G67330.1	KRH21197	AT4G19030.1	21798944
AT5G67330.1	KRH42923	AT4G19030.1	21798944
AT5G67330.1	KRH42926	AT4G19030.1	21798944
AT5G67330.1	KRH45251	AT4G19030.1	21798944
AT5G67330.1	KRH59035	AT4G19030.1	21798944
AT5G67330.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77065	Soybean	plasma membrane	96.64	96.45
KRH04493	Soybean	peroxisome	83.99	82.36
KRH58028	Soybean	plasma membrane	83.4	81.78
VIT_07s0129g00620.t01	Wine grape	plasma membrane	80.43	78.27
AT2G23150.1	Thale cress	plasma membrane	77.47	77.01
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	77.08	76.32
CDX76871	Canola	cytosol, peroxisome, plasma membrane	77.08	75.73
CDY21478	Canola	plasma membrane	74.7	75.15
AT5G67330.1	Thale cress	plasma membrane	75.3	74.41
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	74.51	74.07
Bra012154.1-P	Field mustard	peroxisome	74.51	73.63
CDY57441	Canola	peroxisome	74.51	73.63
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	74.31	73.01
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	74.7	72.97
KRH52059	Soybean	cytosol, nucleus, plasma membrane	74.11	71.84
CDX83202	Canola	plasma membrane	74.9	70.45
KRH47958	Soybean	cytosol, nucleus, plasma membrane	65.61	59.6
KRH06520	Soybean	cytosol, nucleus, plasma membrane	65.81	59.57
CDY12837	Canola	nucleus	74.7	56.76
KRH53274	Soybean	plastid	39.92	37.13
KRH47347	Soybean	plasma membrane	38.74	35.96
KRH09654	Soybean	plastid	38.74	35.9
KRH23641	Soybean	plastid	37.55	34.93
KRH44555	Soybean	mitochondrion	38.54	33.16
Bra039185.1-P	Field mustard	cytosol	76.88	29.92
KRH67695	Soybean	endoplasmic reticulum, plasma membrane, plastid	21.34	8.39
KRH32544	Soybean	plasma membrane	20.16	7.86
KRH19943	Soybean	plasma membrane	19.96	7.69

Protein Annotations

EntrezGene:100789871	MapMan:24.2.3.10	EMBL:ACUP02006750	EnsemblPlantsGene:GLYMA_11G051500	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	UniProt:I1LH97	EnsemblPlants:KRH28413	ProteinID:KRH28413	ProteinID:KRH28413.1	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI000233D5AF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:3844521..3847962

Molecular Weight (calculated)

55445.3 Da

IEP (calculated)

4.794

GRAVY (calculated)

0.642

Length

506 amino acids

Sequence
(BLAST)

001: MPPEQTQQPL LSEEQEETAY DSSEKVVVVG IDDHDGDVEA PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQSGAIAGY SLLWLLMWAT AMGLIIQLLS
101: ARLGVATGRH LAELCREEYP TWARIVLWLM TEIALIGADI QEVIGSAIAI RILSNGVVPL WAGVVITAFD CFIFLFLENY GVRKLEAFFA VLIGVMALSF
201: AWMFGEAKPN GVDVLVGILV PKLSSRTIQQ AVGVVGCIIM PHNVYLHSAL VQSRQVDPSK KGRVQEALNY YSIESTIALI VSFVINIFVT TVFAKGFYGT
301: EIANSIGLVN AGQYLQEKYG GGLFPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWIRALIT RSFAIIPTII VALIFDTSEE SLDVLNEWLN
401: VLQSVQIPFA LIPLLCLVSK EQIMGSFRIG PVLKIISWLV AALVIVINGY LLLEFFSSEV NGAVFATVVC VLTAAYVAFV LYLISRAITY TPWQSLTRSK
501: TATTES

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.