CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21478	Canola	plasma membrane	89.32	91.45
AT2G23150.1	Thale cress	plasma membrane	89.9	90.96
CDX83202	Canola	plasma membrane	89.71	85.87
CDY46091	Canola	cytosol, nucleus, plastid	28.93	77.6
KRH28413	Soybean	plasma membrane	75.73	77.08
KRH77065	Soybean	plasma membrane	74.95	76.13
VIT_07s0129g00620.t01	Wine grape	plasma membrane	75.73	75.0
CDY57441	Canola	peroxisome	74.56	75.0
KRH58028	Soybean	plasma membrane	74.17	74.03
KRH04493	Soybean	peroxisome	73.98	73.84
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.26	72.1
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	71.26	71.26
CDY47594	Canola	cytosol, nucleus, plasma membrane	70.49	68.88
CDY17036	Canola	cytosol, nucleus, plasma membrane	70.49	68.88
CDY17090	Canola	cytosol, peroxisome, plasma membrane	70.29	67.92
CDY06751	Canola	plasma membrane	53.2	65.39
CDY62556	Canola	plasma membrane	64.66	62.59
CDY64917	Canola	cytosol, plasma membrane, plastid	64.27	62.34
CDY12837	Canola	nucleus	74.76	57.81
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	10.1	44.83
Bra039185.1-P	Field mustard	cytosol	95.34	37.77
CDY33364	Canola	cytosol, peroxisome, plasma membrane	35.34	36.99
CDY35054	Canola	extracellular	7.57	36.11
CDY39940	Canola	cytosol, peroxisome, plasma membrane	35.92	35.65
CDX87346	Canola	cytosol, peroxisome, plasma membrane	35.92	35.65
CDY63970	Canola	plastid	35.92	34.77
CDX79348	Canola	cytosol, plasma membrane, vacuole	34.95	34.22
CDX67970	Canola	plasma membrane	31.26	33.26
CDY35053	Canola	mitochondrion, plasma membrane	18.45	32.99
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	35.73	27.67
CDX70318	Canola	plasma membrane	20.0	8.6
CDY10393	Canola	plasma membrane	19.61	8.44

Protein Annotations

MapMan:24.2.3.10	GO:A0A078CI32	EnsemblPlants:CDX76871	ProteinID:CDX76871	ProteinID:CDX76871.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0030001
GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00127385001	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0004EDC5C2	SEG:seg

Description

BnaC08g34570D

Coordinates

chrLK031808:+:1677683..1679937

Molecular Weight (calculated)

56699.5 Da

IEP (calculated)

4.946

GRAVY (calculated)

0.505

Length

515 amino acids

Sequence
(BLAST)

001: MSRLENDRPL LTERIYKELH EEEETAYDEA EKVHIARDED DDERDLEHGV GCGGAPPFSW RKLWLFTGPG FLMSIAFLDP GNLEGDLQAG AVAGYSLLWL
101: LMWATAMGLL VQLLSARLGV ATGRHLAELC REEYPTWAGM VLWVMAELAL IGSDIQEVIG SAIAIQILTN GIFPLWAGVV ITALDCFVFL FLENYGIRKL
201: EAVFAVLIGT MAVAFAWMFG QAKPSGSELL VGILVPKLST RTIQKAVGVV GCIIMPHNVF LHSALVQSRE VDKRQKHRVQ EAINYYTIES TIALAVSFMI
301: NLFVTTVFAK GFYNTDLADS IGLVNAGQYL QDKYGGGVFP ILYIWGIGLL AAGQSSTITG TYAGQFIMGG FLNFKMKKWL RALITRSCAI VPTIIVALVF
401: DSSEATLDVL NEWLNVLQSI QIPFALIPLL CLVSKEQIMG SFKIGPLYQT VAWLVAALVI MINGYLLLEF FTSEVSGVVY TGFVSVFTAS YGAFIVYLIA
501: RGINFTPWRS KAESS

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.