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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035149.1-P Field mustard cytosol, peroxisome, plasma membrane 99.23 99.23
CDX87346 Canola cytosol, peroxisome, plasma membrane 99.23 99.23
CDY63970 Canola plastid 91.71 89.47
CDX79348 Canola cytosol, plasma membrane, vacuole 88.63 87.45
CDX67970 Canola plasma membrane 80.92 86.78
AT1G80830.1 Thale cress plastid 87.86 85.71
CDY33364 Canola cytosol, peroxisome, plasma membrane 79.58 83.94
CDY35053 Canola mitochondrion, plasma membrane 46.44 83.68
CDY35054 Canola extracellular 16.38 78.7
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 17.15 76.72
VIT_09s0070g00210.t01 Wine grape plastid 77.46 74.31
KRH23641 Soybean plastid 77.26 73.71
KRH09654 Soybean plastid 76.88 73.08
KRH47347 Soybean plasma membrane 76.69 73.03
Solyc03g116900.2.1 Tomato cytosol, peroxisome, plasma membrane 72.83 72.41
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 91.71 71.58
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 73.6 70.35
TraesCS7A01G464300.2 Wheat plasma membrane 72.83 68.98
TraesCS7B01G364800.1 Wheat plasma membrane 72.83 68.98
TraesCS7D01G451900.1 Wheat plasma membrane 72.83 68.98
HORVU7Hr1G106570.1 Barley plasma membrane 72.06 68.25
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 71.48 67.45
EER90213 Sorghum plastid 71.48 67.45
Zm00001d014391_P008 Maize plasma membrane 71.29 67.27
KRH44555 Soybean mitochondrion 76.11 67.18
CDY57441 Canola peroxisome 36.03 36.52
CDX76871 Canola cytosol, peroxisome, plasma membrane 35.65 35.92
CDY21478 Canola plasma membrane 34.49 35.59
CDY46091 Canola cytosol, nucleus, plastid 13.1 35.42
CDY64917 Canola cytosol, plasma membrane, plastid 35.84 35.03
CDY62556 Canola plasma membrane 35.84 34.96
CDY47594 Canola cytosol, nucleus, plasma membrane 35.26 34.72
CDY17036 Canola cytosol, nucleus, plasma membrane 35.26 34.72
CDY17090 Canola cytosol, peroxisome, plasma membrane 35.26 34.33
CDX83202 Canola plasma membrane 34.87 33.64
CDY06751 Canola plasma membrane 26.59 32.94
CDY12837 Canola nucleus 36.03 28.08
CDY10393 Canola plasma membrane 20.62 8.95
CDX70318 Canola plasma membrane 20.42 8.85
Protein Annotations
MapMan:24.2.3.10GO:A0A078HN38UniProt:A0A078HN38EnsemblPlants:CDY39940ProteinID:CDY39940ProteinID:CDY39940.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0030001GO:GO:0046873EnsemblPlantsGene:GSBRNA2T00068818001HAMAP:MF_00221InterPro:NRAMP_fam
PFAM:PF01566PRINTS:PR00447PANTHER:PTHR11706PANTHER:PTHR11706:SF38TIGRFAMs:TIGR01197TMHMM:TMhelix
UniParc:UPI0004EEDB7CSEG:seg::::
Description
BnaC06g40180DBnaC06g40180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HN38]
Coordinates
chrLK032461:+:16510..19691
Molecular Weight (calculated)
56007.5 Da
IEP (calculated)
7.723
GRAVY (calculated)
0.702
Length
519 amino acids
Sequence
(BLAST)
001: MAMADVSGPQ LISTTGDADS DQIIVPENKS WKNFFAYLGP GFLVSIAYID PGNFETDLQA GAQYKYELLW IILVASCAGL VIQSLAANLG VVTGKHLAEH
101: CRAEYSKVPN FLLWVVAEIA IVACDIPEVI GTAFALNMLF SIPIWIGVLL TGLSTLMLLA LQQYGVRKLE FLVAFLVFTI AICFVIELHY SKPDAGEVLH
201: GLFVPQLKGN GATGLAISLL GAMVMPHNLF LHSALVLSRK IPRSSTGIKE ACRFYLIESG LALMVAFLIN VSVISVSGAV CNASDLTPED RAKCEDLDLN
301: KASFLLRNVV GKWSSKLFAI ALLASGQSST ITGTYAGQYI MQGFLDLRLV PWLRNFLTRC LAIIPSLIVA LIGGSAGAGK LIIIASMILS FELPFALVPL
401: LKFTSCKIKM GSHVNHMAIS ALTWVIGGLI MGINIYYIVS SFTKLLIHSH MKHVLVVFCG IIGFSGIAIY LASIAYLVFR KNGEAGPLLA STNSQTVETL
501: PRQDIVDMQF GKASTFNAD
Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)
001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD
Arabidopsis Description
NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.