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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:
  • plastid 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, plastid, vacuole
BaCelLo:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67970 Canola plasma membrane 89.92 97.73
CDY63970 Canola plastid 93.54 92.48
AT1G80830.1 Thale cress plastid 90.49 89.47
CDX87346 Canola cytosol, peroxisome, plasma membrane 87.64 88.82
CDY39940 Canola cytosol, peroxisome, plasma membrane 87.45 88.63
CDY33364 Canola cytosol, peroxisome, plasma membrane 80.04 85.57
CDY35053 Canola mitochondrion, plasma membrane 45.63 83.33
CDY35054 Canola extracellular 16.35 79.63
VIT_09s0070g00210.t01 Wine grape plastid 78.9 76.71
KRH23641 Soybean plastid 78.33 75.74
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 16.54 75.0
KRH09654 Soybean plastid 77.76 74.91
Solyc03g116900.2.1 Tomato cytosol, peroxisome, plasma membrane 73.38 73.95
KRH47347 Soybean plasma membrane 76.62 73.94
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 93.35 73.83
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 73.95 71.64
TraesCS7A01G464300.2 Wheat plasma membrane 72.81 69.89
TraesCS7B01G364800.1 Wheat plasma membrane 72.81 69.89
TraesCS7D01G451900.1 Wheat plasma membrane 72.81 69.89
Zm00001d014391_P008 Maize plasma membrane 72.62 69.45
EER90213 Sorghum plastid 72.43 69.27
HORVU7Hr1G106570.1 Barley plasma membrane 72.05 69.16
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 72.05 68.91
KRH44555 Soybean mitochondrion 76.62 68.54
CDY57441 Canola peroxisome 34.41 35.35
CDY21478 Canola plasma membrane 33.46 34.99
CDX76871 Canola cytosol, peroxisome, plasma membrane 34.22 34.95
CDY46091 Canola cytosol, nucleus, plastid 12.55 34.38
CDY17036 Canola cytosol, nucleus, plasma membrane 34.41 34.35
CDY64917 Canola cytosol, plasma membrane, plastid 34.6 34.27
CDY62556 Canola plasma membrane 34.6 34.21
CDY47594 Canola cytosol, nucleus, plasma membrane 34.22 34.16
CDY17090 Canola cytosol, peroxisome, plasma membrane 34.6 34.15
CDY06751 Canola plasma membrane 26.43 33.17
CDX83202 Canola plasma membrane 33.84 33.09
CDY12837 Canola nucleus 34.6 27.33
CDY10393 Canola plasma membrane 19.77 8.7
CDX70318 Canola plasma membrane 19.58 8.6
Protein Annotations
MapMan:24.2.3.10GO:A0A078CVZ7EnsemblPlants:CDX79348ProteinID:CDX79348ProteinID:CDX79348.1GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0030001
GO:GO:0046873EnsemblPlantsGene:GSBRNA2T00132037001HAMAP:MF_00221InterPro:NRAMP_famPFAM:PF01566PRINTS:PR00447
PANTHER:PTHR11706PANTHER:PTHR11706:SF38TIGRFAMs:TIGR01197TMHMM:TMhelixUniParc:UPI0004EDCD25SEG:seg
Description
BnaC06g19550D
Coordinates
chrLK031817:+:1563461..1566273
Molecular Weight (calculated)
57166.0 Da
IEP (calculated)
9.001
GRAVY (calculated)
0.623
Length
526 amino acids
Sequence
(BLAST)
001: MASASERPQF ISNNGGNRSF SNAPLIDNSD PNQIIVPEKK SWKNFFAYLG PGFLVSIAYI DPGNFETDLQ AGAQYKYELL WIILVASCAA LVIQSLAANL
101: GVVTGKHLAE HCRAEYSKVP NFLLWVVAEI AVVALIGTAF ALNMLFHIPV WIGVLLTGLS TLMLLALQQY GVRKLEFLIA FLVFTIAICF FVELHYSKPD
201: PREVLHGLFV PQLKGNGATG LAISLLGAMV MPHNLFLHSA LVLSRKIPRS ATGIKEACRF YLIESGLALT VAFLINVSVI SVSGAVCNAP DLSPEDRAKC
301: EDLDLNKASF LLRNAVGKWS SKLFAIALLA SGQSSTITGT YAGQYVMQGF LDLRLEPWLR NFLTRCLAII PSLVVAIIGG SAGAGKLIII ASMILSFELP
401: FALVPLLKFT SCKIKMGSYV NPMAVSALTW VIGGLIMGIN IYYLVSSFIK LLVHSHMKLG LVVFCGILGF SGIAIYLASI VYLVFRRNRK AIPLLASTNS
501: QTVETLPRQD IVDMQLHGKL STSDVD
Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)
001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD
Arabidopsis Description
NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.