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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • mitochondrion 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G451900.1 Wheat plasma membrane 97.08 97.08
TraesCS7B01G364800.1 Wheat plasma membrane 96.72 96.72
TraesCS7A01G464300.2 Wheat plasma membrane 96.72 96.72
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 90.15 89.82
EER90213 Sorghum plastid 89.6 89.27
Zm00001d014391_P008 Maize plasma membrane 88.32 88.0
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 77.37 78.08
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 16.06 75.86
Bra026089.1-P Field mustard plasma membrane 63.87 74.79
VIT_09s0070g00210.t01 Wine grape plastid 73.18 74.12
CDY63970 Canola plastid 71.72 73.87
AT1G15960.1 Thale cress plasma membrane 70.99 73.81
CDY33364 Canola cytosol, peroxisome, plasma membrane 66.24 73.78
Bra008437.1-P Field mustard cytosol, peroxisome, plasma membrane, plastid 71.53 73.68
AT1G80830.1 Thale cress plastid 71.35 73.5
KRH23641 Soybean plastid 72.63 73.16
KRH47347 Soybean plasma membrane 72.26 72.66
KRH09654 Soybean plastid 72.26 72.53
Bra035149.1-P Field mustard cytosol, peroxisome, plasma membrane 68.43 72.25
CDX87346 Canola cytosol, peroxisome, plasma membrane 68.43 72.25
CDY35054 Canola extracellular 14.23 72.22
Bra003587.1-P Field mustard cytosol, plastid, vacuole 69.34 72.11
CDY39940 Canola cytosol, peroxisome, plasma membrane 68.25 72.06
CDX79348 Canola cytosol, plasma membrane, vacuole 69.16 72.05
Solyc03g116900.2.1 Tomato cytosol, peroxisome, plasma membrane 68.43 71.84
CDY35053 Canola mitochondrion, plasma membrane 37.41 71.18
CDX67970 Canola plasma membrane 62.77 71.07
KRH44555 Soybean mitochondrion 72.81 67.86
Bra033988.1-P Field mustard plasma membrane 60.22 60.77
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 71.35 58.8
HORVU4Hr1G077510.1 Barley plasma membrane 56.2 56.83
HORVU7Hr1G078330.2 Barley peroxisome, plasma membrane 53.1 56.5
HORVU3Hr1G042440.4 Barley mitochondrion, plasma membrane 41.79 37.79
HORVU4Hr1G069320.1 Barley vacuole 35.04 36.78
HORVU5Hr1G018850.2 Barley cytosol, nucleus, plasma membrane 34.49 34.55
HORVU4Hr1G013220.1 Barley mitochondrion, peroxisome, plasma membrane 33.76 33.7
HORVU5Hr1G050310.2 Barley plasma membrane 11.13 24.6
HORVU4Hr1G090460.5 Barley plasma membrane 12.59 16.83
HORVU5Hr1G050330.5 Barley plasma membrane 11.13 6.04
Protein Annotations
EnsemblPlants:HORVU7Hr1G106570.1EnsemblPlantsGene:HORVU7Hr1G106570GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0030001GO:GO:0046873HAMAP:MF_00221
InterPro:NRAMP_famPANTHER:PTHR11706PANTHER:PTHR11706:SF38PFAM:PF01566PRINTS:PR00447SEG:seg
TIGRFAMs:TIGR01197TMHMM:TMhelixUniParc:UPI0002961A9EUniProt:M0W7C8MapMan:24.2.3.10:
Description
No Description!
Coordinates
chrchr7H:-:620108918..620113665
Molecular Weight (calculated)
59575.5 Da
IEP (calculated)
7.927
GRAVY (calculated)
0.544
Length
548 amino acids
Sequence
(BLAST)
001: MSGQRQCSSQ PQFMTSVGQN NTSNGPGTPL IDSIDVDQIV IPEKNSWKNL FSYIGPGFLV SIAYIDPGNF ETDLQAGAQY KYELLWIILI ASCAALVIQS
101: LAASLGVVTG KHLAEHCRAE YPKVTNFILW ILAELAVVAC DIPEVIGTAF ALNMLFKIPI WCGVLITGLS TLMLLFLQQY GIRKLEFLIA FLVFLIATCF
201: LVELGYSKPN SSEVVRGLFV PEIKGDGATG LAISLLGAMV MPHNLFLHSA LVLSRKVPRS VHGIKEACRF YMIESAFALT VAFLINISII SVSGAVCSAD
301: NLNPEDRMNC NDLDLNKASF LLKNVLGNWS SKVFAIALLA SGQSSTITGT YAGQYVMQGF LDLRMTPWLR NLLTRSLAIV PSLIVSLVGG SSAAGQLIIT
401: ASMILSFELP FALVPLLKFT SSKTKMGQHT NSRFITVLTW AIGSFIMVIN IYFLITSFVK LLLHNGLSTV SQVFAGIFGF LGMLIYIAAI LYLVFRKNRK
501: CTLPLLESDA KLGAAAGHAE GEGSLGHLPR EDISSMQLPH QRHASDLD
Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)
001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD
Arabidopsis Description
NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.