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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:
  • plastid 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane, plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY63970 Canola plastid 79.55 99.44
Bra008437.1-P Field mustard cytosol, peroxisome, plasma membrane, plastid 79.4 99.25
CDX67970 Canola plasma membrane 68.12 93.59
CDX79348 Canola cytosol, plasma membrane, vacuole 73.83 93.35
CDX87346 Canola cytosol, peroxisome, plasma membrane 71.73 91.91
CDY39940 Canola cytosol, peroxisome, plasma membrane 71.58 91.71
AT1G80830.1 Thale cress plastid 72.33 90.41
CDY33364 Canola cytosol, peroxisome, plasma membrane 63.46 85.77
CDY35053 Canola mitochondrion, plasma membrane 35.79 82.64
CDY35054 Canola extracellular 13.38 82.41
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 13.98 80.17
KRH23641 Soybean plastid 63.01 77.02
VIT_09s0070g00210.t01 Wine grape plastid 62.56 76.89
KRH09654 Soybean plastid 62.41 76.01
KRH47347 Soybean plasma membrane 61.35 74.86
Solyc03g116900.2.1 Tomato cytosol, peroxisome, plasma membrane 57.74 73.56
GSMUA_AchrUn_... Banana cytosol, peroxisome, plasma membrane 59.55 72.93
TraesCS7D01G451900.1 Wheat plasma membrane 59.4 72.08
TraesCS7A01G464300.2 Wheat plasma membrane 59.1 71.72
TraesCS7B01G364800.1 Wheat plasma membrane 59.1 71.72
HORVU7Hr1G106570.1 Barley plasma membrane 58.8 71.35
Os06t0676000-01 Rice cytosol, mitochondrion, plasma membrane, plastid 58.35 70.55
EER90213 Sorghum plastid 58.35 70.55
Zm00001d014391_P008 Maize plasma membrane 58.2 70.36
KRH44555 Soybean mitochondrion 61.35 69.39
CDY57441 Canola peroxisome 28.42 36.91
CDY46091 Canola cytosol, nucleus, plastid 10.38 35.94
CDY21478 Canola plasma membrane 27.07 35.79
CDX76871 Canola cytosol, peroxisome, plasma membrane 27.67 35.73
CDY62556 Canola plasma membrane 28.27 35.34
CDY17036 Canola cytosol, nucleus, plasma membrane 27.97 35.29
CDY47594 Canola cytosol, nucleus, plasma membrane 27.82 35.1
CDY64917 Canola cytosol, plasma membrane, plastid 27.97 35.03
CDY17090 Canola cytosol, peroxisome, plasma membrane 27.97 34.9
CDX83202 Canola plasma membrane 27.37 33.83
CDY06751 Canola plasma membrane 21.05 33.41
CDY12837 Canola nucleus 28.57 28.53
CDY10393 Canola plasma membrane 16.69 9.28
CDX70318 Canola plasma membrane 16.54 9.18
Protein Annotations
MapMan:24.2.3.10GO:A0A078JDW1UniProt:A0A078JDW1EnsemblPlants:CDY64859ProteinID:CDY64859ProteinID:CDY64859.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0030001GO:GO:0046873EnsemblPlantsGene:GSBRNA2T00043751001HAMAP:MF_00221InterPro:NRAMP_fam
PFAM:PF01566PRINTS:PR00447PANTHER:PTHR11706PANTHER:PTHR11706:SF38TMHMM:TMhelixUniParc:UPI0004EE76BE
SEG:seg:::::
Description
BnaA02g36240DBnaA02g36240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDW1]
Coordinates
chrLK034579:+:18688..24057
Molecular Weight (calculated)
72345.2 Da
IEP (calculated)
8.624
GRAVY (calculated)
0.666
Length
665 amino acids
Sequence
(BLAST)
001: MAASASERPQ FISSNGGNRS FSNAPLIDNS DPNQIIVPEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAQYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EHCRAEYSKV PNFLLWVVAE IAVVACDIPE VIGTAFALNM LFRIPVWIGV LLTGLSTLML LALQQYGVRK LEFLIAFLVF TIALCFVIEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPLI YKQEHNTSMR CINSSPTHLI FSIKINIDFF VINIIGTAFA LNMLFSIPIW IGVLLTGLST
301: LMLLALQQYG VRKLEFLIAF LVFTIALCFV IELHYSKPDP GEVLHGLFVP QLKGNGATGL AISLLGAMVM PHNLLLHSAL VLSRKIPRSS TGIKEACRFY
401: LIESGLALMI AFLINVSVIS VSGAVCNAPD LTPEDRAKCE DLDLNKASFL LRNVVGKWSS KLFAIALLAS GQSSTITGTY AGQYVMQGFL DLRLEPWLRN
501: FLTRCLAIIP SLIVALIGGS AGAGKLIIIA SMILSFELPF ALVPLLKFTS CKTKMGSHVN HMAITTLTWV IGALIMGINI YYIVSSFTKL LIHSHMKLAL
601: VIFCGILGFS GIAIYLASIA YLVFRKNRKA SPLLASTNSQ TVETLPRQDI VDMQLHGKAA ASDLD
Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.