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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040711.1-P Field mustard cytosol, peroxisome, plasma membrane 97.94 98.12
CDY17036 Canola cytosol, nucleus, plasma membrane 96.06 97.15
CDY47594 Canola cytosol, nucleus, plasma membrane 95.68 96.77
AT1G47240.1 Thale cress plasma membrane 93.25 93.77
CDY06751 Canola plasma membrane 70.92 90.21
KRH61379 Soybean cytosol, peroxisome, plasma membrane 74.67 76.83
KRH52059 Soybean cytosol, nucleus, plasma membrane 75.23 76.82
GSMUA_Achr9P26850_001 Banana plasma membrane 58.72 73.82
PGSC0003DMT400055473 Potato cytosol, peroxisome, plasma membrane 72.8 71.85
CDX76871 Canola cytosol, peroxisome, plasma membrane 67.92 70.29
CDY21478 Canola plasma membrane 66.04 69.98
PGSC0003DMT400059923 Potato cytosol, peroxisome, plasma membrane 67.73 69.69
CDY57441 Canola peroxisome 65.85 68.55
Solyc04g078250.2.1 Tomato cytosol, nucleus, plasma membrane 66.42 68.21
TraesCS5D01G084900.1 Wheat plasma membrane 69.79 68.01
TraesCS5B01G078700.1 Wheat cytosol, plasma membrane, vacuole 69.61 67.82
CDY64917 Canola cytosol, plasma membrane, plastid 67.54 67.8
CDY62556 Canola plasma membrane 67.54 67.67
HORVU5Hr1G018850.2 Barley cytosol, nucleus, plasma membrane 69.42 67.64
TraesCS5A01G072200.1 Wheat cytosol, plasma membrane, vacuole 69.42 67.64
EES17269 Sorghum cytosol, peroxisome, plasma membrane 68.29 66.91
GSMUA_Achr6P07820_001 Banana cytosol, plasma membrane, vacuole 55.53 66.82
Os12t0581600-01 Rice cytosol, nucleus, plasma membrane 67.54 66.54
CDX83202 Canola plasma membrane 67.17 66.54
GSMUA_Achr4P32750_001 Banana peroxisome, plasma membrane, vacuole 58.16 66.52
EER92665 Sorghum cytosol, peroxisome, plasma membrane 63.79 65.89
Zm00001d048129_P004 Maize cytosol, peroxisome, plasma membrane 63.41 65.5
HORVU4Hr1G069320.1 Barley vacuole 63.98 65.33
TraesCS4D01G076500.1 Wheat cytosol, peroxisome, plasma membrane 64.92 65.28
TraesCS4A01G237200.1 Wheat cytosol, peroxisome, plasma membrane 64.92 65.16
TraesCS4D01G254100.1 Wheat cytosol, plasma membrane, vacuole 63.41 65.13
TraesCS4B01G078000.1 Wheat cytosol, peroxisome, plasma membrane 64.73 64.97
TraesCS4B01G254300.1 Wheat cytosol, plasma membrane, vacuole 63.41 64.88
TraesCS4A01G050500.1 Wheat cytosol, peroxisome, plasma membrane 63.23 64.68
Os03t0208500-01 Rice plasma membrane 63.04 64.12
Zm00001d030846_P001 Maize plasma membrane 67.54 63.6
GSMUA_Achr3P18820_001 Banana cytosol, peroxisome, plasma membrane 56.66 63.45
HORVU4Hr1G013220.1 Barley mitochondrion, peroxisome, plasma membrane 64.54 62.66
Zm00001d033367_P001 Maize cytosol, nucleus, plasma membrane 63.41 62.59
KXG38042 Sorghum cytosol, nucleus, plasma membrane 63.41 61.9
CDY46091 Canola cytosol, nucleus, plastid 21.76 60.42
Os03t0606600-00 Rice extracellular, mitochondrion, peroxisome 22.89 55.96
Os03t0607400-01 Rice cytosol, peroxisome, plasma membrane, plastid 22.51 55.56
CDY12837 Canola nucleus 65.85 52.7
Os01t0733001-00 Rice endoplasmic reticulum, nucleus 11.07 47.97
CDY35055 Canola endoplasmic reticulum, extracellular, vacuole 9.38 43.1
CDY33364 Canola cytosol, peroxisome, plasma membrane 33.02 35.77
CDX87346 Canola cytosol, peroxisome, plasma membrane 34.33 35.26
CDY39940 Canola cytosol, peroxisome, plasma membrane 34.33 35.26
CDY63970 Canola plastid 35.08 35.15
CDX79348 Canola cytosol, plasma membrane, vacuole 34.15 34.6
CDX67970 Canola plasma membrane 30.21 33.26
CDY35054 Canola extracellular 6.57 32.41
CDY35053 Canola mitochondrion, plasma membrane 17.26 31.94
CDY64859 Canola cytosol, peroxisome, plasma membrane, plastid 34.9 27.97
CDX70318 Canola plasma membrane 18.95 8.43
CDY10393 Canola plasma membrane 18.76 8.36
Protein Annotations
MapMan:24.2.3.10GO:A0A078FRI8UniProt:A0A078FRI8EnsemblPlants:CDY17090ProteinID:CDY17090ProteinID:CDY17090.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0030001GO:GO:0046873EnsemblPlantsGene:GSBRNA2T00095113001HAMAP:MF_00221InterPro:NRAMP_fam
PFAM:PF01566PRINTS:PR00447PANTHER:PTHR11706PANTHER:PTHR11706:SF46TIGRFAMs:TIGR01197TMHMM:TMhelix
UniParc:UPI0004EE8B3BSEG:seg::::
Description
BnaC06g00230DBnaC06g00230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRI8]
Coordinates
chrLK032070:+:364951..367328
Molecular Weight (calculated)
58554.9 Da
IEP (calculated)
4.958
GRAVY (calculated)
0.497
Length
533 amino acids
Sequence
(BLAST)
001: MENDVKVAEK VEEADRLLPP QSLPSNSDEE EPESESEAEA AFESRDKIVI VDFESAGDPA AVPPFSWRKL WLFTGPGFLM SIAFLDPGNL EGDLQAGAIA
101: GYSLLWLLMW ATAMGLLIQM LSARVGVATG RHLAELCRDE YPTWARYLLW SMAELALIGA DIQEVIGSAI AIQILSRGVL PLWAGVVITA SDCFLFLFLE
201: NYGVRKLEAV FAVLIATMGL SFAWMFGETK PSGKELMIGI LLPRLSSKTI RQAVGVVGCV IMPHNVFLHS ALVQSRQIDP KRKSRVQEAL NYYLIESSVA
301: LFISFMINLF VTTVFAKGFY GTEKANNIGL VNAGHYLQEK FGGGLLPILY IWGIGLLAAG QSSTITGTYA GQFIMGGFLN LRLKKWMRAV ITRSCAIVPT
401: MIVAIVFNTS EASLDVLNEW LNVLQSVQIP FALLPLLTLV SKEEVMGDFK IGPILQRIAW TVAALVMIIN GYLLLDFFVS EVNGFMFGVT VCVWTTAYVA
501: FIVYLISHSN FIPSPWSSSS SIELPKRVTV SNS
Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)
001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS
Arabidopsis Description
NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.