Factsheet for TraesCS4D01G254100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	99.04	98.66
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	98.84	98.46
HORVU4Hr1G069320.1	Barley	vacuole	98.65	98.08
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	89.79	90.31
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	88.82	89.34
Os03t0208500-01	Rice	plasma membrane	90.17	89.31
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	60.31	70.65
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	62.81	68.49
TraesCS5D01G084900.1	Wheat	plasma membrane	68.4	64.9
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.86	64.74
CDY17036	Canola	cytosol, nucleus, plasma membrane	65.32	64.33
AT1G47240.1	Thale cress	plasma membrane	65.51	64.15
CDY47594	Canola	cytosol, nucleus, plasma membrane	65.13	64.14
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	65.13	64.14
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.51	63.91
CDY17090	Canola	cytosol, peroxisome, plasma membrane	65.13	63.41
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	63.01	63.13
KRH52059	Soybean	cytosol, nucleus, plasma membrane	63.01	62.64
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	63.78	62.45
CDY06751	Canola	plasma membrane	50.1	62.05
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	63.97	61.48
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	61.27	61.39
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	61.08	61.08
AT4G18790.1	Thale cress	plasma membrane	59.34	58.11
CDY64917	Canola	cytosol, plasma membrane, plastid	59.34	58.0
CDY62556	Canola	plasma membrane	59.34	57.89
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	59.34	57.89
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.11	57.67
KRH06520	Soybean	cytosol, nucleus, plasma membrane	58.57	54.38
KRH47958	Soybean	cytosol, nucleus, plasma membrane	58.19	54.22
Solyc04g078240.1.1	Tomato	cytosol	16.76	54.04
TraesCS7D01G451900.1	Wheat	plasma membrane	37.38	35.4
TraesCS4D01G299400.1	Wheat	plasma membrane	35.45	34.2
TraesCS7D01G324000.1	Wheat	plasma membrane	34.49	34.1
TraesCS3D01G206000.1	Wheat	cytosol, peroxisome, plasma membrane	28.71	27.44
TraesCS5D01G166000.1	Wheat	plasma membrane	19.08	7.98
TraesCS4D01G036000.3	Wheat	plasma membrane	17.73	7.58

Protein Annotations

EnsemblPlants:TraesCS4D01G254100.1	EnsemblPlantsGene:TraesCS4D01G254100	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam
PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	PFAM:PF01566	PRINTS:PR00447	SEG:seg	TIGRFAMs:TIGR01197
TMHMM:TMhelix	MapMan:24.2.3.10	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:422959904..422963534

Molecular Weight (calculated)

56702.6 Da

IEP (calculated)

6.525

GRAVY (calculated)

0.516

Length

519 amino acids

Sequence
(BLAST)

001: MASRDLAESL LPGGGASASS SHDEYEERAY DSDDKVSISI SDSEPDDDGD PGAARARPAF SWRKLWRFTG PGFLMCIGFL DPGNLEGDLQ AGAAAGYQLL
101: WLLLWATVMG ALVQLLSARL GVVTGKHLAE LCREEYPPWA TRALWVMTEL ALVGADIQEV IGSAIAIKIL SGGIVPLWGG VVITAFDCFI FLFLENYGVR
201: KLEAFFGVLI ATMAISFAIM FGETKPSGKE LLIGLVVPKL SSKTIKQAVG IVGCIIMPHN VFLHSALVQS RKIDTKKKSR VQEAVYYYNI ESILALIVSF
301: FINICVTTVF AKGFYGSDKA DNIGLENAGQ YLQEKYGTAL FPVLYIWAIG LLASGQSSTI TGTYAGQFVM GGFLNLRLKK WLRAVITRSF AIIPTMIVAL
401: FFDTEDPTMD VLNESLNVLQ SIQIPFALIP LITLVSSEQL MGSFVVGPIT KVISWIVTIF LMLINGYLIL SFYTNEVRGA VVRSSLCVVL AVYLAFIIYL
501: ILRNTTLYSR LRSSVSKSS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.