Factsheet for HORVU4Hr1G069320.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
vacuole 3
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

vacuole: 19391183

msms PMID: 19391183 doi

T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	98.08	98.65
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	97.32	97.5
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	97.13	97.31
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	89.27	90.31
Os03t0208500-01	Rice	plasma membrane	90.23	89.89
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	88.31	89.34
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	60.15	70.88
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	62.84	68.91
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.86	65.11
AT1G47240.1	Thale cress	plasma membrane	65.9	64.91
CDY17036	Canola	cytosol, nucleus, plasma membrane	65.52	64.9
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	67.82	64.72
CDY47594	Canola	cytosol, nucleus, plasma membrane	65.33	64.71
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	65.33	64.71
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.71	64.47
CDY17090	Canola	cytosol, peroxisome, plasma membrane	65.33	63.98
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	63.22	63.71
KRH52059	Soybean	cytosol, nucleus, plasma membrane	63.22	63.22
CDY06751	Canola	plasma membrane	50.19	62.53
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	64.18	62.04
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	61.49	61.97
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	61.3	61.66
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	63.6	60.47
AT4G18790.1	Thale cress	plasma membrane	59.2	58.3
CDY64917	Canola	cytosol, plasma membrane, plastid	59.0	58.0
CDY62556	Canola	plasma membrane	59.0	57.89
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	59.0	57.89
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.01	57.67
KRH06520	Soybean	cytosol, nucleus, plasma membrane	58.24	54.38
KRH47958	Soybean	cytosol, nucleus, plasma membrane	57.85	54.22
Solyc04g078240.1.1	Tomato	cytosol	16.67	54.04
HORVU7Hr1G106570.1	Barley	plasma membrane	36.78	35.04
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	34.1	34.56
HORVU4Hr1G077510.1	Barley	plasma membrane	34.87	33.58
HORVU3Hr1G042440.4	Barley	mitochondrion, plasma membrane	28.16	24.26
HORVU5Hr1G050310.2	Barley	plasma membrane	11.49	24.19
HORVU4Hr1G090460.5	Barley	plasma membrane	9.77	12.44
HORVU5Hr1G050330.5	Barley	plasma membrane	7.66	3.96

Protein Annotations

EnsemblPlants:HORVU4Hr1G069320.1	EnsemblPlantsGene:HORVU4Hr1G069320	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam
PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	PFAM:PF01566	PRINTS:PR00447	SEG:seg	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI00029487F8	UniProt:M0XUV1	MapMan:24.2.3.10	:	:

Description

No Description!

Coordinates

chrchr4H:+:569879776..569883776

Molecular Weight (calculated)

56888.8 Da

IEP (calculated)

5.817

GRAVY (calculated)

0.507

Length

522 amino acids

Sequence
(BLAST)

001: MASRDLGESL LPGGGASASS SHDEYEERAY DSDDKVSISI SDSEPDDDDG GGGPGAARAR PAFSWRKLWR FTGPGFLMCI GFLDPGNLEG DLQAGAAAGY
101: QLLWLLLWAT VMGALVQLLS ARLGVVTGKH LAELCREEYP PWATRALWVM TELALVGADI QEVIGSAIAI KILSGGIVPL WGGVVITAFD CFIFLFLENY
201: GVRKLEAFFG VLIATMAISF AIMFGETKPS GKELLIGLVV PKLSSKTIKQ AVGIVGCIIM PHNVFLHSAL VQSRKIDTKK KSRVQEAVYY YNIESILALI
301: ISFFINICVT TVFAKGFYGS EQADNIGLEN AGQYLQEKYG TALFPVLYIW AIGLLASGQS STITGTYAGQ FVMGGFLNLR LKKWLRAVIT RSFAIIPTMI
401: VALFFDTEDP TMDVLNESLN VLQSIQIPFA LIPLITLVSS EQLMGSFVVG PITKVISWIV TIFLMLINGY LILSFYTEEV RGAVVRSSLC VVLAVYLAFI
501: VYLILRNTTL YSRLRSSVSK SS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.