CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	96.51	96.51
Os03t0208500-01	Rice	plasma membrane	92.25	90.84
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	90.7	89.83
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	90.31	89.79
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	90.31	89.44
HORVU4Hr1G069320.1	Barley	vacuole	90.31	89.27
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	61.82	72.01
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	62.98	68.28
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	69.96	66.36
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.02	65.49
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	65.12	64.86
AT1G47240.1	Thale cress	plasma membrane	66.28	64.53
CDY17036	Canola	cytosol, nucleus, plasma membrane	65.89	64.52
KRH52059	Soybean	cytosol, nucleus, plasma membrane	65.12	64.37
CDY47594	Canola	cytosol, nucleus, plasma membrane	65.7	64.33
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	65.7	64.33
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.89	63.91
CDY17090	Canola	cytosol, peroxisome, plasma membrane	65.89	63.79
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	62.98	62.74
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	65.12	62.22
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	65.31	61.72
CDY06751	Canola	plasma membrane	49.81	61.34
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	61.63	61.27
AT4G18790.1	Thale cress	plasma membrane	61.43	59.81
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	61.63	59.77
CDY62556	Canola	plasma membrane	61.63	59.77
CDY64917	Canola	cytosol, plasma membrane, plastid	61.43	59.7
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.22	57.67
KRH47958	Soybean	cytosol, nucleus, plasma membrane	60.08	55.66
KRH06520	Soybean	cytosol, nucleus, plasma membrane	60.27	55.64
Solyc04g078240.1.1	Tomato	cytosol	16.86	54.04
EER90213	Sorghum	plastid	37.21	34.91
EER96161	Sorghum	cytosol, plasma membrane, vacuole	34.69	34.1
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	33.72	32.52
KXG29392	Sorghum	plasma membrane	34.3	32.36
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	28.29	25.57
KXG37779	Sorghum	plasma membrane	17.25	19.1
OQU91151	Sorghum	plasma membrane	15.7	16.67
EES02232	Sorghum	plasma membrane	18.8	7.63
KXG37781	Sorghum	plasma membrane	18.02	7.52

Protein Annotations

MapMan:24.2.3.10	EntrezGene:8054221	UniProt:C5WTQ4	EnsemblPlants:EER92665	ProteinID:EER92665	ProteinID:EER92665.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	EnsemblPlantsGene:SORBI_3001G462500	unigene:Sbi.15735	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI0001A828D5	RefSeq:XP_002465667.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:73687489..73691740

Molecular Weight (calculated)

56349.4 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.546

Length

516 amino acids

Sequence
(BLAST)

001: MASRDLAESL LSGGGGGASA SHDEYEERAY DSDDKVSIAI SDSDGEDDGA PASRPPFSWR KLWRFTGPGF LMCIAFLDPG NLEGDLQAGA AAGYQLLWLL
101: MWATVMGALM QLLSARLGVA TGKHLAELCR EEYPTWATRA LWAMTELALV GADIQEVIGS AIAIKILSGG TVPLWGGVVI TALDCFIFLF LENYGVRKLE
201: AFFAVLIATM AVSFAVMFGE TKPSGKELLI GLVVPKLSSK TIKQAVGIVG CIIMPHNVFL HSALVQSRKI DTNKKSRVQE AVYYYNIESI LALIVSFFIN
301: ICVTTVFAKG FYGSKQADSI GLENAGQYLQ EKYGTAFFPI LYIWAIGLLA SGQSSTITGT YAGQFVMGGF LNLRLKKWLR AMITRSFAII PTMIVALFFD
401: TEDPTMDILN EALNVLQSIQ IPFALIPLIT LVSKEQIMGS FVIGPITKVI SWIVTVFLML INGYLILSFY ITDVRGALLR SSLCIVLIVY LAFIVYLIVR
501: NTSLYSRLCS SMSKSP

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.