CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 5
golgi 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005479_P001	Maize	plasma membrane	91.05	81.57
Os07t0258400-01	Rice	plasma membrane	76.95	77.99
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	74.67	76.12
TraesCS7A01G327300.1	Wheat	plasma membrane	76.0	76.0
TraesCS7D01G324000.1	Wheat	plasma membrane	75.81	75.81
TraesCS7B01G227900.1	Wheat	plasma membrane	75.62	75.62
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	73.52	72.15
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	57.52	69.75
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	64.95	64.34
VIT_18s0001g02120.t01	Wine grape	plasma membrane	65.9	63.84
KRH53274	Soybean	plastid	66.1	63.79
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	64.38	63.77
GSMUA_Achr11P...	Banana	cytosol	62.1	62.69
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	64.0	60.65
VIT_18s0001g02140.t01	Wine grape	plasma membrane	56.76	60.32
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	55.43	57.06
EER90213	Sorghum	plastid	55.05	52.55
KXG29392	Sorghum	plasma membrane	51.62	49.54
VIT_18s0001g02130.t01	Wine grape	plastid	17.33	44.83
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	45.52	41.86
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	34.1	34.69
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	35.62	34.25
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	35.05	33.82
KXG37779	Sorghum	plasma membrane	19.05	21.46
OQU91151	Sorghum	plasma membrane	16.76	18.11
EES02232	Sorghum	plasma membrane	22.29	9.2
KXG37781	Sorghum	plasma membrane	21.14	8.98

Protein Annotations

MapMan:24.2.3.10	EntrezGene:8054435	UniProt:C5X2P7	EnsemblPlants:EER96161	ProteinID:EER96161	ProteinID:EER96161.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005381	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0034755	GO:GO:0046873	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF41	EnsemblPlantsGene:SORBI_3002G095600
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0001A83A8F	RefSeq:XP_002459640.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:9876398..9881833

Molecular Weight (calculated)

56375.1 Da

IEP (calculated)

7.173

GRAVY (calculated)

0.767

Length

525 amino acids

Sequence
(BLAST)

001: MDAGAHVPAG VVVDIEALAG PAVGSEVPAA PPKGPAWKRF LYHVGPGFMV CLAYLDPGNL GTDLQAGADH RYELLWVTLI GLIFALIIQS LSANLGVVTG
101: RHLAELCKTE YPAWVRICLW LLAELAVIAA DIPEVIGTAF AFNLLFHIPL WVGVLITGSS TLLLLGMQKY GVRKLELLVG LLVFVMAACF FIEMSIVKPP
201: AKEVIYGLFV PSLSGSGATG DTIALLGALV MPHNLFLHSA LVLSRNTPSS VRGIKDACRF FLLESGVAMF VALLINICII SVSGTVCNSS NLSSVDSAKC
301: SDITLDSSSF LLRNVLGNNS AVVYGVALLA CGISSSITGT YAGQYIMQGF LDIKMKQWLR NLMTRSIAIV PSLIVAIIGG SSGAGRLIII ASMILSFELP
401: FALIPLLKFS SSSNTMGQHK NSIYIIGFSW ILGSVIIGIN IYFLCSKFVG WILHNSLPIY ANILIGIIVF PLMLLYICAV IYLTLRKETI KFVPCGELQA
501: IETDKSKVAD DSNNEEKEYV SYNGI

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.