Factsheet for Solyc11g018530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	97.74	97.74
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	63.77	78.06
KRH53274	Soybean	plastid	80.0	77.94
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	73.02	72.34
TraesCS4D01G299400.1	Wheat	plasma membrane	71.7	70.63
HORVU4Hr1G077510.1	Barley	plasma membrane	72.08	70.48
TraesCS4A01G004400.1	Wheat	plasma membrane	71.7	70.37
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	71.32	70.26
GSMUA_Achr11P...	Banana	cytosol	68.87	70.19
TraesCS4B01G300600.1	Wheat	plasma membrane	71.51	70.19
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	72.64	69.49
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	66.98	68.14
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	65.66	67.57
TraesCS7B01G227900.1	Wheat	plasma membrane	66.6	67.24
TraesCS7A01G327300.1	Wheat	plasma membrane	66.42	67.05
Os07t0258400-01	Rice	plasma membrane	65.47	66.99
TraesCS7D01G324000.1	Wheat	plasma membrane	66.23	66.86
EER96161	Sorghum	cytosol, plasma membrane, vacuole	64.34	64.95
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	59.81	62.16
Zm00001d005479_P001	Maize	plasma membrane	64.34	58.19
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	55.09	55.94
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	37.55	39.1
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	35.09	35.84
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	9.06	29.45
Solyc04g078240.1.1	Tomato	cytosol	7.92	26.09
Solyc09g005490.1.1	Tomato	extracellular	5.09	21.26
Solyc09g007870.2.1	Tomato	plastid	22.08	8.89
Solyc09g005540.1.1	Tomato	cytosol, nucleus, vacuole	8.68	7.47

Protein Annotations

MapMan:24.2.3.10	EMBL:AY196091	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	UniProt:Q84LR1
EnsemblPlantsGene:Solyc11g018530.1	EnsemblPlants:Solyc11g018530.1.1	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0000191BBE	SEG:seg

Description

Root-specific metal transporter [Source:UniProtKB/TrEMBL;Acc:Q84LR1]

Coordinates

chr11:-:8641837..8646829

Molecular Weight (calculated)

57787.5 Da

IEP (calculated)

7.567

GRAVY (calculated)

0.600

Length

530 amino acids

Sequence
(BLAST)

001: MENQQQNQVI GGSKRIVALN ESPLPSNNDH HIEHQKHGWK NFFAYVGPGF LVSLAYLDPG NLETDLQAGA NHRYELLWVI LIGLIFALII QSLAANLGVS
101: TGKHLSELCR AEYPVFVKYC LWLLAEVAVI AADIPEVIGT AFALNILFHI PVWAGVLCTG VSTLLFIGLQ RYGVRKLELL IAILVFVMAA CFFGEMSYVK
201: PPANELFKGM FIPKLNGDGA TADAIALLGA LVMPHNLFLH SALVLSRKIP NSVRGINDAC KFFLIESGFA LFVSFLINVA VVSVSGTVCG ADNLSDQNKE
301: SCSDITLNSA SFLLKNVLGK SSSTVYAIAL LASGQSSTIT GTYAGQFIMQ GFLDLKMKTW LRNLFTRLIA ITPSLVVSII GGSSGAGRLI IIASMILSFE
401: LPFALIPLLK FSSSSTKLGP HKNSIYIIVI SWILGLGIIG INIYYLSTAF VGWLISNNLP KVGNVLIGIV VFPLMAIYIL AVIYLMFRKD KVVTYIDPIK
501: DDHMENGINS MELVDRVPYR EDLADIPLPQ

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.