Factsheet for PGSC0003DMT400023921

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	97.74	97.74
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	63.58	77.83
KRH53274	Soybean	plastid	79.06	77.02
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	72.64	71.96
TraesCS4D01G299400.1	Wheat	plasma membrane	71.51	70.45
HORVU4Hr1G077510.1	Barley	plasma membrane	71.89	70.3
TraesCS4A01G004400.1	Wheat	plasma membrane	71.51	70.19
TraesCS4B01G300600.1	Wheat	plasma membrane	71.32	70.0
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	70.75	69.7
GSMUA_Achr11P...	Banana	cytosol	68.3	69.62
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	72.64	69.49
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	66.04	67.96
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	66.79	67.95
TraesCS7A01G327300.1	Wheat	plasma membrane	66.79	67.43
TraesCS7B01G227900.1	Wheat	plasma membrane	66.42	67.05
Os07t0258400-01	Rice	plasma membrane	65.47	66.99
TraesCS7D01G324000.1	Wheat	plasma membrane	66.23	66.86
EER96161	Sorghum	cytosol, plasma membrane, vacuole	63.77	64.38
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	59.62	61.96
Zm00001d005479_P001	Maize	plasma membrane	63.96	57.85
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	37.74	38.84
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	36.98	36.3
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	35.47	36.29
PGSC0003DMT400055484	Potato	plasma membrane	21.7	8.84

Protein Annotations

EntrezGene:102584518	MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	UniProt:M1AJ59
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	EnsemblPlantsGene:PGSC0003DMG400009247	PGSC:PGSC0003DMG400009247	EnsemblPlants:PGSC0003DMT400023921
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI000295DB73
RefSeq:XP_006351140.1	SEG:seg	:	:	:	:

Description

Root-specific metal transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400009247]

Coordinates

chr11:+:8550924..8555673

Molecular Weight (calculated)

57722.3 Da

IEP (calculated)

7.307

GRAVY (calculated)

0.590

Length

530 amino acids

Sequence
(BLAST)

001: MENQQQNQVV GGSKRIVAVT ESTLPSNNDH HIEHQKHGWK NFFAYVGPGF LVSLAYLDPG NLETDLQAGA NHRYELLWVI LIGLIFALII QSLAANLGVS
101: TGKHLSELCR AEYPVFVKYC LWLLAEVAVI AADIPEVIGT AFALNILFHI PVWAGVLCTG VSTLLFIGLQ RYGVRKLELL IAILVFVMAA CFFGEMSYVK
201: PPANELFKGM FIPKLNGDGA TADAIALLGA LVMPHNLFLH SALVLSRKIP NSVRGVNDAC KFFLIESGFA LFVSFLINVA VVSVSGTVCG ADNLSDQNKE
301: SCSDITLNSA SFLLKNVLGK SSSTVYAIAL LASGQSSTIT GTYAGQFIMQ GFLDLKMKTW LRNLFTRLIA ITPSLVVSII GGPSGAGRLI IIASMILSFE
401: LPFALIPLLK FSSSSTKLGP HKNSIYIIVI SWVLGLGIIG INIYYLSTAF VGWLISNNLP KVGNVLIGIV VFPLMAIYIL SVIYLMFRKD TVVTYVDPIK
501: DDHMENGTNN MELVDRVPYR EDLADIPLPQ

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.