Factsheet for VIT_00s0218g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
endoplasmic reticulum 3
plasma membrane 4
extracellular 2
vacuole 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	53.92	63.51
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	62.16	59.81
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	61.96	59.62
VIT_18s0001g02120.t01	Wine grape	plasma membrane	62.16	58.49
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	58.43	57.86
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	59.41	56.64
TraesCS7A01G327300.1	Wheat	plasma membrane	58.24	56.57
TraesCS7D01G324000.1	Wheat	plasma membrane	58.04	56.38
TraesCS7B01G227900.1	Wheat	plasma membrane	58.04	56.38
GSMUA_Achr11P...	Banana	cytosol	57.45	56.35
TraesCS4D01G299400.1	Wheat	plasma membrane	59.22	56.13
TraesCS4A01G004400.1	Wheat	plasma membrane	59.41	56.11
HORVU4Hr1G077510.1	Barley	plasma membrane	59.61	56.09
VIT_18s0001g02140.t01	Wine grape	plasma membrane	54.31	56.07
Os07t0258400-01	Rice	plasma membrane	56.86	55.98
TraesCS4B01G300600.1	Wheat	plasma membrane	59.22	55.93
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	58.82	55.76
EER96161	Sorghum	cytosol, plasma membrane, vacuole	57.06	55.43
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	59.41	54.69
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	53.73	52.59
VIT_09s0070g00210.t01	Wine grape	plastid	53.92	50.83
Zm00001d005479_P001	Maize	plasma membrane	57.25	49.83
VIT_18s0001g02130.t01	Wine grape	plastid	18.04	45.32
VIT_07s0129g00620.t01	Wine grape	plasma membrane	35.29	34.62
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.88	34.14
VIT_08s0040g01730.t01	Wine grape	plasma membrane	23.53	9.1

Protein Annotations

EntrezGene:100262929	wikigene:100262929	MapMan:24.2.3.10	ProteinID:CBI40851	ProteinID:CBI40851.3	UniProt:D7UDN6
EMBL:FN596763	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EntrezGene:LOC100262929	wikigene:LOC100262929
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38
TIGR:TC60843	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00015CDF35	ArrayExpress:VIT_00s0218g00100	EnsemblPlantsGene:VIT_00s0218g00100
EnsemblPlants:VIT_00s0218g00100.t01	unigene:Vvi.15934	RefSeq:XP_002267072	RefSeq:XP_002267072.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:14017898..14021323

Molecular Weight (calculated)

54837.6 Da

IEP (calculated)

8.540

GRAVY (calculated)

0.546

Length

510 amino acids

Sequence
(BLAST)

001: MALVQIQETP LWKKLLSYVG PGFLVSVAYL DPGNLETDLQ AGANHKYELL WIVLVGLIFA FIIQSRSANL GVATGKHLSE HCRMEYPKPV NYCLWILAEV
101: AVIAADIPEV IGTAFAINIL FHVPIWGGVL LAGLSTLLLL GLQRYGIRKL EVAIGGLVLV VGGCFCSVMV HARPSAKDVV TGMFVPKLNG DGATRDAIAL
201: LGALIMPHNL FLHSALVTSR KIPHSFHAIR SASKYFIIES GLALFIALLI NVAVVSVSGS VCSNPHASSQ NKDHCEDITL ESASFLLNNA LGNWSSKLYA
301: VSLLASGQSS TVTGTYAGQY IMQGFLDLKM RLWLRNLVTR CIAIAPSLMV CIIGGSSGAA RLIIIASMIL SFELPFALIP LLRFTSSKAK MGAHRSSIMV
401: TLLSWLLGFG SIGINIYFLS SSLIGWMTNN DIPKTGSILA GVVIFPVMML YAAMLVYLTT KRESSDSSTR GPQQSTNNTP TTDTTGLEGG TNFSSTQRAH
501: EIEVVDIAYA

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.