Factsheet for VIT_08s0040g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 1
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0093g00580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03280.1	VIT_19s0093g00580.t01	AT1G66340.1	19769567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19943	Soybean	plasma membrane	62.14	62.38
KRH32544	Soybean	plasma membrane	61.08	62.02
KRH67695	Soybean	endoplasmic reticulum, plasma membrane, plastid	60.17	61.62
Solyc09g005490.1.1	Tomato	extracellular	5.84	60.63
PGSC0003DMT400055484	Potato	plasma membrane	59.41	60.18
Solyc09g007870.2.1	Tomato	plastid	59.79	59.88
AT5G03280.1	Thale cress	plasma membrane	56.3	57.34
CDX70318	Canola	plasma membrane	50.83	55.93
CDY10393	Canola	plasma membrane	50.0	55.1
Bra009539.1-P	Field mustard	plasma membrane	54.4	54.69
GSMUA_Achr9P10350_001	Banana	plasma membrane	42.49	46.4
Solyc09g005540.1.1	Tomato	cytosol, nucleus, vacuole	21.17	45.29
Os07t0156732-01	Rice	nucleus	20.56	44.94
Os07t0157401-01	Rice	nucleus	20.56	44.94
GSMUA_Achr6P31160_001	Banana	plasma membrane	43.02	44.61
TraesCSU01G131800.1	Wheat	plasma membrane	15.86	43.82
EES02232	Sorghum	plasma membrane	41.58	43.08
Os07t0155600-01	Rice	cytosol, peroxisome, plasma membrane	41.58	42.78
TraesCSU01G131600.1	Wheat	plasma membrane	15.78	42.71
TraesCS5A01G547500.1	Wheat	plasma membrane	15.63	42.3
KXG37779	Sorghum	plasma membrane	14.87	42.06
Zm00001d039341_P126	Maize	plasma membrane	41.43	42.03
Zm00001d033625_P015	Maize	plasma membrane	15.17	42.02
TraesCS4B01G381200.1	Wheat	plasma membrane	15.48	41.89
HORVU5Hr1G050310.2	Barley	plasma membrane	7.59	40.32
TraesCS5D01G166000.1	Wheat	plasma membrane	37.78	40.16
TraesCS5A01G161200.4	Wheat	plasma membrane	37.71	40.11
TraesCS2B01G133000.1	Wheat	plasma membrane	36.42	40.0
TraesCS5B01G158500.1	Wheat	plasma membrane	37.56	39.95
HORVU5Hr1G050330.5	Barley	plasma membrane	30.35	39.6
TraesCS4A01G275600.1	Wheat	plasma membrane	36.04	39.55
TraesCS4D01G036000.3	Wheat	plasma membrane	35.81	38.91
KXG37781	Sorghum	plasma membrane	36.27	38.67
TraesCS4B01G038100.1	Wheat	plasma membrane	35.28	38.46
GSMUA_Achr7P01280_001	Banana	plasma membrane	43.02	38.31
HORVU4Hr1G090460.5	Barley	plasma membrane	11.76	37.8
Os03t0700800-01	Rice	plasma membrane	37.03	37.57
OQU91151	Sorghum	plasma membrane	13.81	37.45
Zm00001d013492_P001	Maize	plasma membrane	14.26	33.81
VIT_18s0001g02120.t01	Wine grape	plasma membrane	9.94	24.17
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	9.1	23.53
VIT_18s0001g02140.t01	Wine grape	plasma membrane	8.65	23.08
VIT_09s0070g00210.t01	Wine grape	plastid	9.03	22.0
VIT_07s0129g00620.t01	Wine grape	plasma membrane	8.65	21.92
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	8.42	20.71
VIT_18s0001g02130.t01	Wine grape	plastid	2.96	19.21

Protein Annotations

EntrezGene:100256742	wikigene:100256742	MapMan:11.5.2.3	ProteinID:CCB57081	ProteinID:CCB57081.1	InterPro:EIN2
UniProt:F6HR32	EMBL:FN596008	GO:GO:0001736	GO:GO:0002237	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0003729	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006950	GO:GO:0006970
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0009408	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009719	GO:GO:0009789
GO:GO:0009873	GO:GO:0009926	GO:GO:0009987	GO:GO:0010087	GO:GO:0010119	GO:GO:0010150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0030001	GO:GO:0030154	GO:GO:0031348
GO:GO:0042742	GO:GO:0046873	GO:GO:0048765	GO:GO:0050832	GO:GO:0051301	GO:GO:0052544
GO:GO:0071281	EntrezGene:LOC100256742	wikigene:LOC100256742	InterPro:NRAMP_fam	PFAM:PF01566	PIRSF:PIRSF037378
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF44	TMHMM:TMhelix	UniParc:UPI0001983D6B	ArrayExpress:VIT_08s0040g01730
EnsemblPlantsGene:VIT_08s0040g01730	EnsemblPlants:VIT_08s0040g01730.t01	unigene:Vvi.849	RefSeq:XP_002276399	RefSeq:XP_002276399.1	RefSeq:XP_010653585.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:12843518..12852631

Molecular Weight (calculated)

144159.0 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.005

Length

1318 amino acids

Sequence
(BLAST)

0001: MEAEISNANH MPDVRHQFLP AVFPMLLISI GYVDPGKWAA VVEGGARFGF DLVALMLVFN FAAVLCQCLA ARIGVVTGRD LAQICSDEYD KSTCMLLGIQ
0101: TELSMIALDL TMILGIAHGL HLMFGADLFS CVFLTAIDAV LFPLFATLLE NGKAKFLCIW MVGFVLLCYA LGVLISLPEI PLSINGMPTK FSGESAFALM
0201: SLLGANIMPH NFYLHSSIVK RHQGLPNVSK AALCHSHIFA ILFVFSGIFL LNYVLMNAAA NVFYSTGLVL LTFQDAMSLM DQVFRSPIAP VFFLLVLFLC
0301: NQITALTWDL GGQVVLHHLL RMDIPGWLHH ATIRIIAIIP ALYCVRTSGA EGAYQLLLFM QVMVAMFLPS SVIPLVRVAS SRSIMGVYKV SQFVEFLAVV
0401: ALVGMLGLKI IFVVEMIFGN SDWVGNLRWN IGNTTSGSYF LLLTTACTSL CFMLWLAATP LKSASARSDA QAWNWDSPKA VTEPSFEREE IDFMDSRYHG
0501: EDPVHKQEPA PALEKSFGSH LDMPVENFDF DLPETIMDSD HGPILTTIEE NCSNITFPSS PICHSEKPES TVESVSPTTV VNEVSHVDLL DTSTLKIESV
0601: DPVEKTVGIE GDSQIEKDDE EGDAWEPEEA SKEISGSSPS LTSEGPGSFR SLSGKSDEGG NGTGSLSRLA GLGRAARRQL AAVLDEFWGQ LYDFHGQATP
0701: EAKAKKLDLL LGLDSKPAIS SLKVDSIEKE FTGYFPSVGG RGSDSLISSS LYDSPRQQTM QSSMDSSYRG VQRGSSSFWS NNIQMLDAYV QNSSRNVLDA
0801: GERRYSSLRL PPSSDGLDYQ PATVHGYQIA SYLSRIAKDK SSDYMNPPIE PTPPKSPSLG PANYRDPLSF ALGQKLQNGL GSVQASGFQN RAVSRNSALQ
0901: SERAYYEMCS SGPAETGGIP ANTKKYHSLP DISGISVPLR NLYLSDRSAQ WDNTVGFGQS IGRTTYDRTS IDHSTYEQSL YSNTGSTTRG PLAFDELSPS
1001: KAYRDPFSLP LSTSSDTGSL WSRQPFEQFG VADKTRSVVG EGVGSRSNSI TRDASSLLHL EAKLLQSFRH CIVRLIKLEG SDWLFRPNEG ADEDLIYRVA
1101: AREKFLYEAE TRDISWGVNM GEAQYSSSDR KSGSALLLVS SVPHCGEGCV WRVDLVISFG VWCIHRILDL SFMESRPELW GKYTYVLNRL QGIIDLAFSK
1201: PRSPMLPCFC LQIPASHQQR SSPPVSNGIL PPAVKSVKGK CTSAAMLLEI IKDVEIAISC RKGRTGTAAG DVAFPKGKEN LASVLKRYKR RLSNKPVGTH
1301: DNMGSGLRKL PTSSTYGS

Best Arabidopsis Sequence Match ( AT5G03280.1 )
(BLAST)

0001: MEAEIVNVRP QLGFIQRMVP ALLPVLLVSV GYIDPGKWVA NIEGGARFGY DLVAITLLFN FAAILCQYVA ARISVVTGKH LAQICNEEYD KWTCMFLGIQ
0101: AEFSAILLDL TMVVGVAHAL NLLFGVELST GVFLAAMDAF LFPVFASFLE NGMANTVSIY SAGLVLLLYV SGVLLSQSEI PLSMNGVLTR LNGESAFALM
0201: GLLGASIVPH NFYIHSYFAG ESTSSSDVDK SSLCQDHLFA IFGVFSGLSL VNYVLMNAAA NVFHSTGLVV LTFHDALSLM EQVFMSPLIP VVFLMLLFFS
0301: SQITALAWAF GGEVVLHDFL KIEIPAWLHR ATIRILAVAP ALYCVWTSGA DGIYQLLIFT QVLVAMMLPC SVIPLFRIAS SRQIMGVHKI PQVGEFLALT
0401: TFLGFLGLNV VFVVEMVFGS SDWAGGLRWN TVMGTSIQYT TLLVSSCASL CLILWLAATP LKSASNRAEA QIWNMDAQNA LSYPSVQEEE IERTETRRNE
0501: DESIVRLESR VKDQLDTTSV TSSVYDLPEN ILMTDQEIRS SPPEERELDV KYSTSQVSSL KEDSDVKEQS VLQSTVVNEV SDKDLIVETK MAKIEPMSPV
0601: EKIVSMENNS KFIEKDVEGV SWETEEATKA APTSNFTVGS DGPPSFRSLS GEGGSGTGSL SRLQGLGRAA RRHLSAILDE FWGHLYDFHG QLVAEARAKK
0701: LDQLFGTDQK SASSMKADSF GKDISSGYCM SPTAKGMDSQ MTSSLYDSLK QQRTPGSIDS LYGLQRGSSP SPLVNRMQML GAYGNTTNNN NAYELSERRY
0801: SSLRAPSSSE GWEHQQPATV HGYQMKSYVD NLAKERLEAL QSRGEIPTSR SMALGTLSYT QQLALALKQK SQNGLTPGPA PGFENFAGSR SISRQSERSY
0901: YGVPSSGNTD TVGAAVANEK KYSSMPDISG LSMSARNMHL PNNKSGYWDP SSGGGGYGAS YGRLSNESSL YSNLGSRVGV PSTYDDISQS RGGYRDAYSL
1001: PQSATTGTGS LWSRQPFEQF GVAERNGAVG EELRNRSNPI NIDNNASSNV DAEAKLLQSF RHCILKLIKL EGSEWLFGQS DGVDEELIDR VAAREKFIYE
1101: AEAREINQVG HMGEPLISSV PNCGDGCVWR ADLIVSFGVW CIHRVLDLSL MESRPELWGK YTYVLNRLQG VIDPAFSKLR TPMTPCFCLQ IPASHQRASP
1201: TSANGMLPPA AKPAKGKCTT AVTLLDLIKD VEMAISCRKG RTGTAAGDVA FPKGKENLAS VLKRYKRRLS NKPVGMNQDG PGSRKNVTAY GSLG

Arabidopsis Description

EIN2Ethylene-insensitive protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S814]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.