Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G299400.1 | Wheat | plasma membrane | 98.15 | 98.51 |
| TraesCS4B01G300600.1 | Wheat | plasma membrane | 98.33 | 98.33 |
| HORVU4Hr1G077510.1 | Barley | plasma membrane | 97.78 | 97.42 |
| OQU88782 | Sorghum | cytosol, peroxisome, plasma membrane | 86.3 | 87.1 |
| Zm00001d019327_P001 | Maize | cytosol, peroxisome, plasma membrane | 80.93 | 83.88 |
| Os07t0257200-01 | Rice | cytosol, peroxisome, plasma membrane | 82.96 | 83.27 |
| GSMUA_Achr5P25950_001 | Banana | cytosol, nucleus, plasma membrane | 61.85 | 77.14 |
| TraesCS7A01G327300.1 | Wheat | plasma membrane | 73.33 | 75.43 |
| Solyc11g018530.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 70.37 | 71.7 |
| PGSC0003DMT400023921 | Potato | cytosol, peroxisome, plasma membrane | 70.19 | 71.51 |
| KRH53274 | Soybean | plastid | 71.67 | 71.14 |
| GSMUA_Achr11P... | Banana | cytosol | 67.22 | 69.81 |
| VIT_18s0001g02120.t01 | Wine grape | plasma membrane | 70.0 | 69.74 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 70.37 | 68.59 |
| VIT_18s0001g02140.t01 | Wine grape | plasma membrane | 60.74 | 66.4 |
| VIT_00s0218g00100.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 56.11 | 59.41 |
| TraesCS7A01G464300.2 | Wheat | plasma membrane | 58.15 | 57.3 |
| TraesCS3A01G195100.1 | Wheat | cytosol, peroxisome, plasma membrane | 51.11 | 50.83 |
| VIT_18s0001g02130.t01 | Wine grape | plastid | 18.7 | 49.75 |
| TraesCS4A01G050500.1 | Wheat | cytosol, peroxisome, plasma membrane | 34.07 | 35.32 |
| TraesCS4A01G237200.1 | Wheat | cytosol, peroxisome, plasma membrane | 33.89 | 34.46 |
| TraesCS5A01G072200.1 | Wheat | cytosol, plasma membrane, vacuole | 34.44 | 34.0 |
| TraesCS5A01G547500.1 | Wheat | plasma membrane | 18.15 | 20.12 |
| TraesCS5A01G161200.4 | Wheat | plasma membrane | 21.3 | 9.28 |
| TraesCS4A01G275600.1 | Wheat | plasma membrane | 19.44 | 8.74 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G004400.1 | EnsemblPlantsGene:TraesCS4A01G004400 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0030001 | GO:GO:0046873 | HAMAP:MF_00221 | InterPro:NRAMP_fam |
| PANTHER:PTHR11706 | PANTHER:PTHR11706:SF38 | PFAM:PF01566 | PRINTS:PR00447 | SEG:seg | TIGRFAMs:TIGR01197 |
| TMHMM:TMhelix | MapMan:24.2.3.10 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:3062818..3066947
Molecular Weight (calculated)
58517.3 Da
IEP (calculated)
6.851
GRAVY (calculated)
0.555
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIEREAPSS ERGRSWRANA VQDVQDGKKF EDGDETLVKE PAWKRFLSHV GPGFMVSLAY LDPGNLETDL QAGANHRYEL LWVILIGLIF ALIIQSLAAN
101: LGVVTGKHLA EICKTEYPKP VMICLWLLAE VAVIAADIPE VIGTAFAFYL LFRIPVWIGV LITGSSTLLL LGLQRYGVRK LEFLISMLVF VMAACFFGEL
201: SIVKPPAKEV LKGLFIPKLK GNGATGDAIA LLGALVMPHN LFLHSALVLS RKTPSSVRGI KDACRFFLYE SGFALFVALL INIAVISVSG TVCFGENLSA
301: EDIDKCSDLS LDNSSFLLKN VLGRSSSIVY GVALLASGQS STITGTYAGQ YIMQGFLDIK MKTWLRNLMT RCIAIAPSLV VSIIGGSNGA GRLIIIASMI
401: LSFELPFALI PLLKFSSSSS KMGPHKNSIY IIVFSWTLGL MLIGINVYFL STSFMGWLIN SSLPTYAKVL VGVVVCPLML VYLVAVVYLT FRKDTVVTFV
501: ADSCKADAEK AAGGSGEDDD EPVPYREDLA DIPLPAHSTG
101: LGVVTGKHLA EICKTEYPKP VMICLWLLAE VAVIAADIPE VIGTAFAFYL LFRIPVWIGV LITGSSTLLL LGLQRYGVRK LEFLISMLVF VMAACFFGEL
201: SIVKPPAKEV LKGLFIPKLK GNGATGDAIA LLGALVMPHN LFLHSALVLS RKTPSSVRGI KDACRFFLYE SGFALFVALL INIAVISVSG TVCFGENLSA
301: EDIDKCSDLS LDNSSFLLKN VLGRSSSIVY GVALLASGQS STITGTYAGQ YIMQGFLDIK MKTWLRNLMT RCIAIAPSLV VSIIGGSNGA GRLIIIASMI
401: LSFELPFALI PLLKFSSSSS KMGPHKNSIY IIVFSWTLGL MLIGINVYFL STSFMGWLIN SSLPTYAKVL VGVVVCPLML VYLVAVVYLT FRKDTVVTFV
501: ADSCKADAEK AAGGSGEDDD EPVPYREDLA DIPLPAHSTG
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.