Factsheet for GSMUA_AchrUn_randomP11650_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	64.8	82.91
GSMUA_Achr11P...	Banana	cytosol	74.19	79.04
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	69.49	72.64
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	69.49	72.64
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	69.13	71.59
VIT_18s0001g02120.t01	Wine grape	plasma membrane	69.68	71.22
TraesCS4D01G299400.1	Wheat	plasma membrane	68.41	70.45
TraesCS4A01G004400.1	Wheat	plasma membrane	68.59	70.37
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	68.23	70.26
HORVU4Hr1G077510.1	Barley	plasma membrane	68.59	70.11
KRH53274	Soybean	plastid	68.77	70.04
TraesCS4B01G300600.1	Wheat	plasma membrane	68.05	69.81
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	64.26	68.33
VIT_18s0001g02140.t01	Wine grape	plasma membrane	59.57	66.8
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	61.91	66.6
TraesCS7D01G324000.1	Wheat	plasma membrane	62.27	65.71
TraesCS7A01G327300.1	Wheat	plasma membrane	62.09	65.52
TraesCS7B01G227900.1	Wheat	plasma membrane	61.37	64.76
Os07t0258400-01	Rice	plasma membrane	60.29	64.48
EER96161	Sorghum	cytosol, plasma membrane, vacuole	60.65	64.0
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	54.69	59.41
Zm00001d005479_P001	Maize	plasma membrane	60.11	56.83
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	53.79	54.88
VIT_18s0001g02130.t01	Wine grape	plastid	17.15	46.8
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	31.23	39.05
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	31.59	37.55
GSMUA_Achr9P26850_001	Banana	plasma membrane	28.7	37.5
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	29.6	34.45
GSMUA_Achr9P10350_001	Banana	plasma membrane	20.58	9.44
GSMUA_Achr6P31160_001	Banana	plasma membrane	20.58	8.97
GSMUA_Achr7P01280_001	Banana	plasma membrane	20.04	7.5

Protein Annotations

MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSMUA_AchrUn_randomG11650_001	EnsemblPlants:GSMUA_AchrUn_randomP11650_001
EnsemblPlants:GSMUA_AchrUn_randomT11650_001	UniProt:M0U8C4	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00029577FE	SEG:seg

Description

Metal transporter Nramp6 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11650_001]

Coordinates

chrchrUn_random:+:56420792..56424454

Molecular Weight (calculated)

59515.8 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.387

Length

554 amino acids

Sequence
(BLAST)

001: MSSFQLSEES PGREIRRDGT HGRGSKRVVA GDEEGDNGED RDDKSCSQDE PQDQKPGWKK FLAHVGPGFL VSLAYLDPGN LETDLQAGAK HRYELLWVVL
101: IGLAFALIIQ SLAANLGVAT GKHLAELCKA EYPKYVNYCL WVMAEVAVIA ADIPEVIGTA FALNILFRIP VSAGVLITGL STLLLLGLQR YGVRKLELLI
201: SMLVFVMAAC YFGELSYVNP PATQVMKGLF VPRLGGDGAT SDAVALLGAL VMPHNLFLHS ALVLSRKTPP SAEGINDACR YFLLESGFAL SVALLINVAV
301: VSVSGTVCAG RSLPPEDSET CSNLTLNSAS FLLKNLLGKS SSIVYGIALL ASGQSSTISG TYAGQYIMQG FLDVKMRMWL QNLMTRCIAI GPSLVVSIIG
401: GPAGAGRLII ITSMILSFEL PFALIPLLKF SSSGTKMRPH KNSIYIIVIS WILGFGVIGI NVYFLSTSFV EWITSSSLPK PATALVGVIV FPFMAVYILA
501: VIYLTFRKDT AVTFVDKSDS SLKEMEDGVH RSDGDKGGDV VPFRGDLNNI SPPE

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.