CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	90.66	91.67
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	72.34	74.39
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	72.16	74.2
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	71.98	74.15
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	72.53	72.79
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	72.34	71.95
GSMUA_Achr9P26850_001	Banana	plasma membrane	54.4	70.05
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	57.33	67.17
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	62.27	65.64
KRH52059	Soybean	cytosol, nucleus, plasma membrane	62.64	65.52
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	61.72	65.31
CDY47594	Canola	cytosol, nucleus, plasma membrane	61.9	64.14
AT1G47240.1	Thale cress	plasma membrane	62.09	63.96
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	61.72	63.95
CDY17036	Canola	cytosol, nucleus, plasma membrane	61.72	63.95
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	62.64	63.81
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.09	63.72
CDY17090	Canola	cytosol, peroxisome, plasma membrane	61.9	63.41
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	58.97	62.16
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	61.36	62.04
CDY06751	Canola	plasma membrane	47.44	61.81
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	58.06	61.08
CDY62556	Canola	plasma membrane	58.79	60.34
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	58.79	60.34
CDY64917	Canola	cytosol, plasma membrane, plastid	58.42	60.08
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	23.81	59.63
AT4G18790.1	Thale cress	plasma membrane	57.69	59.43
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	17.4	58.28
KRH47958	Soybean	cytosol, nucleus, plasma membrane	57.14	56.01
KRH06520	Soybean	cytosol, nucleus, plasma membrane	57.14	55.81
Solyc04g078240.1.1	Tomato	cytosol	14.84	50.31
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	10.81	47.97
EER96161	Sorghum	cytosol, plasma membrane, vacuole	34.25	35.62
EER90213	Sorghum	plastid	34.98	34.73
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	33.33	34.02
KXG29392	Sorghum	plasma membrane	32.78	32.72
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	28.21	26.97
KXG37779	Sorghum	plasma membrane	16.12	18.88
OQU91151	Sorghum	plasma membrane	15.2	17.08
EES02232	Sorghum	plasma membrane	18.68	8.02
KXG37781	Sorghum	plasma membrane	17.4	7.69

Protein Annotations

MapMan:24.2.3.10	UniProt:A0A1B6QJE9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlants:KXG38042
ProteinID:KXG38042	ProteinID:KXG38042.1	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	EnsemblPlantsGene:SORBI_3001G170000	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0003C6907A

Description

hypothetical protein

Coordinates

chr1:+:14188594..14192267

Molecular Weight (calculated)

59953.3 Da

IEP (calculated)

5.639

GRAVY (calculated)

0.441

Length

546 amino acids

Sequence
(BLAST)

001: MAANHNVDVA REPAASASPP TYEAEHRALL RSSSFISAIS DNNEGCKECA FEPSEKVIVS VSGDRKGDAN EEGAFYASGG CMPPFSWRKL WLFSGPGFLM
101: SIAFVDPGNI EGDLQAGATA GGTLLWVLLW ATTMGLLVQL HAARLGVATG RHLAELCRDE YPDWARHALW LMAEIALVSA DIQEVIGSAI AIKILSHGLL
201: PLWAGVVITA LDCFMFLSLE NYGVRKLEGL FAVLITTMAC SFAWMFVETE PSGKDLFIGI LVPKLSSGTI KQAVGLVGGV ITPHNVFLHS ALVQSRKIDP
301: NKEYEVREAL RYYSIESTLA LVVPFMINLF VTTVFAKGFH GTKEADSIGL ENAGKYLQEK FGGDFFPILY IWGVGLLAAG TSSTITGTYA GQFIMGGFLN
401: WRLKKWIRAL ITRSFAIVPT IIVALFFNKS GYELDVLNEW LNVLQSIQIP FSLIPLITLV SKEEVMGMYK IGPRMKIATW IVASLPILIN SYMLLDFFSS
501: EMEGVLYSLA LCVVVATYSV FILYLIFRGM EFPYYLATTL HENSSI

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.