CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47958	Soybean	cytosol, nucleus, plasma membrane	96.42	96.77
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	65.65	70.85
KRH52059	Soybean	cytosol, nucleus, plasma membrane	65.3	69.92
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.91	69.78
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	64.58	66.85
KRH28413	Soybean	plasma membrane	59.57	65.81
KRH77065	Soybean	plasma membrane	59.39	65.48
KRH58028	Soybean	plasma membrane	60.11	65.12
KRH04493	Soybean	peroxisome	59.75	64.73
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	59.93	64.67
GSMUA_Achr9P26850_001	Banana	plasma membrane	48.12	63.44
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	58.68	63.2
AT4G18790.1	Thale cress	plasma membrane	58.86	62.08
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	48.84	61.63
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	58.14	61.09
CDY62556	Canola	plasma membrane	58.14	61.09
CDY64917	Canola	cytosol, plasma membrane, plastid	57.96	61.02
TraesCS5D01G084900.1	Wheat	plasma membrane	59.39	60.69
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	59.21	60.51
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	58.86	60.48
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	59.03	60.33
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	50.27	60.3
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	55.64	60.27
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	58.86	60.15
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	57.42	59.33
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	54.56	59.11
Os03t0208500-01	Rice	plasma membrane	54.92	58.59
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	54.38	58.57
HORVU4Hr1G069320.1	Barley	vacuole	54.38	58.24
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	54.2	58.16
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	54.2	58.16
Zm00001d030846_P001	Maize	plasma membrane	58.86	58.13
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	55.1	58.11
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	49.37	57.98
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	54.92	57.82
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	54.74	57.63
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	55.28	57.22
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	55.81	57.14
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	54.38	55.37
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	19.68	50.93
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	18.78	48.17
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	10.55	47.97
KRH09654	Soybean	plastid	32.38	33.15
KRH53274	Soybean	plastid	32.02	32.9
KRH23641	Soybean	plastid	32.02	32.9
KRH47347	Soybean	plasma membrane	31.66	32.48
KRH44555	Soybean	mitochondrion	31.31	29.76
KRH32544	Soybean	plasma membrane	18.25	7.86
KRH67695	Soybean	endoplasmic reticulum, plasma membrane, plastid	18.07	7.85
KRH19943	Soybean	plasma membrane	18.07	7.69

Protein Annotations

MapMan:24.2.3.10	EMBL:ACUP02009849	EnsemblPlantsGene:GLYMA_16G027800	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
UniProt:I1MKM5	EnsemblPlants:KRH06520	ProteinID:KRH06520	ProteinID:KRH06520.1	HAMAP:MF_00221	InterPro:NRAMP_fam
PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI000233BBDE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:2712534..2717006

Molecular Weight (calculated)

61994.3 Da

IEP (calculated)

4.472

GRAVY (calculated)

0.404

Length

559 amino acids

Sequence
(BLAST)

001: MSTQLQQHNK REFKGEEEEE EEEEENHLLH SECETIPLSS PHTSPSEWEH GNREEEEEEE EKDTVYAAKD KVQIFDLESA SGASVGSTAV PPFSWRKLWL
101: FTGPGLLMSV AFLDPGNLEG DLQAGAIAGY SLLWLLMWST FMGLVIQLLS ARLGVATGRH LAELCREEYS NWARLVLWIL AELALIAADI QEVIGSAIAL
201: KILSHGILPI WAGVIITAMD CFFFLFLENY GVRKLEGVFA VFIGTMGFSF AWMFFDTNPS EEELLMGLLI PRVNSKTLRQ AVEIVGCVIT PHNVFLHSAL
301: VQSRDIDIRN KGQVQEAINY YSIESSVALL VTLVINLFVI TVFARVFYGT EQAKGIGLVN AGQYLQERYG GGLFPILYIW GIGLLAAGQS STITGTYAGQ
401: FITEGFLNLN IKKWLRALIT RSCAIVPTMI CAIVFNTSEG SLDTMNEWLN VVQAIQIPFA LIPLLTLVSK EEVMGTFRIG PIVERVAWSV AVLVILVYGY
501: MLLDFFLDEV DGVLFGFLVF LGAAAWISFI IYLVQHSGAI SSILVRSSYS KGFFSLAGN

Best Arabidopsis Sequence Match ( AT4G18790.1 )
(BLAST)

001: MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET

Arabidopsis Description

NRAMP5Metal transporter Nramp5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN36]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.