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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
MultiLoc:cytosol
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G078700.1 Wheat cytosol, plasma membrane, vacuole 98.35 98.35
TraesCS5D01G084900.1 Wheat plasma membrane 98.17 98.17
TraesCS5A01G072200.1 Wheat cytosol, plasma membrane, vacuole 97.99 97.99
EES17269 Sorghum cytosol, peroxisome, plasma membrane 86.11 86.58
Os12t0581600-01 Rice cytosol, nucleus, plasma membrane 84.46 85.4
Zm00001d030846_P001 Maize plasma membrane 85.74 82.86
GSMUA_Achr9P26850_001 Banana plasma membrane 58.14 75.0
HORVU4Hr1G013220.1 Barley mitochondrion, peroxisome, plasma membrane 74.41 74.13
KRH61379 Soybean cytosol, peroxisome, plasma membrane 68.19 72.01
GSMUA_Achr4P32750_001 Banana peroxisome, plasma membrane, vacuole 61.06 71.67
Os03t0607400-01 Rice cytosol, peroxisome, plasma membrane, plastid 28.15 71.3
KRH52059 Soybean cytosol, nucleus, plasma membrane 67.46 70.69
AT1G47240.1 Thale cress plasma membrane 67.82 70.0
CDY47594 Canola cytosol, nucleus, plasma membrane 67.28 69.83
VIT_18s0001g09490.t01 Wine grape cytosol, peroxisome, plasma membrane 68.37 69.78
CDY17036 Canola cytosol, nucleus, plasma membrane 67.09 69.64
Bra040791.1-P Field mustard cytosol, nucleus, plasma membrane 67.09 69.64
Bra040711.1-P Field mustard cytosol, peroxisome, plasma membrane 67.64 69.55
CDY17090 Canola cytosol, peroxisome, plasma membrane 67.64 69.42
HORVU4Hr1G069320.1 Barley vacuole 64.72 67.82
PGSC0003DMT400055473 Potato cytosol, peroxisome, plasma membrane 66.54 67.41
Solyc04g078250.2.1 Tomato cytosol, nucleus, plasma membrane 63.07 66.47
CDY06751 Canola plasma membrane 50.82 66.35
PGSC0003DMT400059923 Potato cytosol, peroxisome, plasma membrane 62.16 65.64
CDY64917 Canola cytosol, plasma membrane, plastid 60.88 62.71
CDY62556 Canola plasma membrane 60.88 62.59
Bra012577.1-P Field mustard cytosol, plasma membrane, plastid 60.69 62.41
AT4G18790.1 Thale cress plasma membrane 59.6 61.51
Solyc04g078230.1.1 Tomato cytosol, extracellular, plastid 17.92 60.12
KRH47958 Soybean cytosol, nucleus, plasma membrane 59.96 58.89
KRH06520 Soybean cytosol, nucleus, plasma membrane 60.15 58.86
Solyc04g078240.1.1 Tomato cytosol 15.54 52.8
HORVU7Hr1G078330.2 Barley peroxisome, plasma membrane 34.19 36.31
HORVU7Hr1G106570.1 Barley plasma membrane 34.55 34.49
HORVU4Hr1G077510.1 Barley plasma membrane 34.0 34.32
HORVU3Hr1G042440.4 Barley mitochondrion, plasma membrane 28.52 25.74
HORVU5Hr1G050310.2 Barley plasma membrane 9.51 20.97
HORVU4Hr1G090460.5 Barley plasma membrane 9.32 12.44
HORVU5Hr1G050330.5 Barley plasma membrane 7.86 4.26
Protein Annotations
MapMan:24.2.3.10EMBL:AK375649ncoils:CoilUniProt:F2EHM2GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0030001
GO:GO:0046873EnsemblPlantsGene:HORVU5Hr1G018850EnsemblPlants:HORVU5Hr1G018850.2HAMAP:MF_00221InterPro:NRAMP_famPFAM:PF01566
PRINTS:PR00447PANTHER:PTHR11706PANTHER:PTHR11706:SF46TIGRFAMs:TIGR01197TMHMM:TMhelixUniParc:UPI0002008D5C
SEG:seg:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EHM2]
Coordinates
chrchr5H:-:78758261..78762458
Molecular Weight (calculated)
58999.0 Da
IEP (calculated)
4.976
GRAVY (calculated)
0.463
Length
547 amino acids
Sequence
(BLAST)
001: MSAHAGSGAA GDAGAARADD EALALLPASA PGGDHGDGGS SSGREEEEDL EERAFEASEK VIVSISDDPD ADADLEAQLA SSSGSPPFSW RKLWLFTGPG
101: FLMSIAFLDP GNLEGDLQAG AAAGDTLLWL LMWATAMGLL VQLLAARLGV ATGRHLAELC RDEYPDWARR ALWLMAEVAM VGADIQEVIG SAIAIKILSN
201: GYLPLWAGVV ITALDCFIFL SLENYGVRKL EAVFAVLIAT MAVSFAWMFT DTKPNGKDLL IGILVPKLSS KTIRQAVGVV GCVIMPHNVF LHSALVQSRK
301: IDPKKEYQVR EALRYYSIES TVALAISFMI NLFVTTVFAK GFYGSKEAGS IGLENAGQYL QEKFGGGFLP ILYIWGIGLL AAGQSSTITG TYAGQFIMGG
401: FLNLRLKKWL RALITRSFAI VPTIIVALFF DSSDALDVLN EWLNVLQSIQ IPFALIPLIT LVSKEQVMGV FRIGRKMQAV TWTVAALLIT INGYLLVDFF
501: SSEIRGPLYG SVLCVAVLAY ASFVLYLILR GTEISNQMIV AIRKRLS
Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)
001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS
Arabidopsis Description
NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.