Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012577.1-P | Field mustard | cytosol, plasma membrane, plastid | 91.13 | 90.79 |
| CDY62556 | Canola | plasma membrane | 90.94 | 90.6 |
| CDY64917 | Canola | cytosol, plasma membrane, plastid | 90.75 | 90.58 |
| AT1G47240.1 | Thale cress | plasma membrane | 68.49 | 68.49 |
| VIT_18s0001g09490.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 68.49 | 67.72 |
| PGSC0003DMT400059923 | Potato | cytosol, peroxisome, plasma membrane | 64.72 | 66.22 |
| GSMUA_Achr9P26850_001 | Banana | plasma membrane | 52.45 | 65.57 |
| PGSC0003DMT400055473 | Potato | cytosol, peroxisome, plasma membrane | 66.04 | 64.81 |
| AT2G23150.1 | Thale cress | plasma membrane | 62.08 | 64.64 |
| Zm00001d048129_P004 | Maize | cytosol, peroxisome, plasma membrane | 60.38 | 62.02 |
| Solyc04g078250.2.1 | Tomato | cytosol, nucleus, plasma membrane | 60.57 | 61.85 |
| EER92665 | Sorghum | cytosol, peroxisome, plasma membrane | 59.81 | 61.43 |
| GSMUA_Achr4P32750_001 | Banana | peroxisome, plasma membrane, vacuole | 53.96 | 61.37 |
| AT5G67330.1 | Thale cress | plasma membrane | 59.06 | 61.13 |
| Os12t0581600-01 | Rice | cytosol, nucleus, plasma membrane | 62.08 | 60.81 |
| TraesCS5D01G084900.1 | Wheat | plasma membrane | 62.45 | 60.51 |
| TraesCS5B01G078700.1 | Wheat | cytosol, plasma membrane, vacuole | 62.26 | 60.33 |
| EES17269 | Sorghum | cytosol, peroxisome, plasma membrane | 61.89 | 60.29 |
| TraesCS5A01G072200.1 | Wheat | cytosol, plasma membrane, vacuole | 62.08 | 60.15 |
| HORVU5Hr1G018850.2 | Barley | cytosol, nucleus, plasma membrane | 61.51 | 59.6 |
| TraesCS4D01G254100.1 | Wheat | cytosol, plasma membrane, vacuole | 58.11 | 59.34 |
| HORVU4Hr1G069320.1 | Barley | vacuole | 58.3 | 59.2 |
| Os03t0208500-01 | Rice | plasma membrane | 58.49 | 59.16 |
| GSMUA_Achr6P07820_001 | Banana | cytosol, plasma membrane, vacuole | 49.43 | 59.14 |
| TraesCS4A01G050500.1 | Wheat | cytosol, peroxisome, plasma membrane | 58.11 | 59.12 |
| TraesCS4A01G237200.1 | Wheat | cytosol, peroxisome, plasma membrane | 59.06 | 58.95 |
| TraesCS4B01G254300.1 | Wheat | cytosol, plasma membrane, vacuole | 57.92 | 58.93 |
| Zm00001d033367_P001 | Maize | cytosol, nucleus, plasma membrane | 60.0 | 58.89 |
| TraesCS4D01G076500.1 | Wheat | cytosol, peroxisome, plasma membrane | 58.87 | 58.87 |
| KRH06520 | Soybean | cytosol, nucleus, plasma membrane | 62.08 | 58.86 |
| TraesCS4B01G078000.1 | Wheat | cytosol, peroxisome, plasma membrane | 58.87 | 58.76 |
| KRH47958 | Soybean | cytosol, nucleus, plasma membrane | 61.7 | 58.71 |
| KXG38042 | Sorghum | cytosol, nucleus, plasma membrane | 59.43 | 57.69 |
| Zm00001d030846_P001 | Maize | plasma membrane | 61.32 | 57.42 |
| HORVU4Hr1G013220.1 | Barley | mitochondrion, peroxisome, plasma membrane | 59.43 | 57.38 |
| GSMUA_Achr3P18820_001 | Banana | cytosol, peroxisome, plasma membrane | 50.0 | 55.67 |
| Os03t0607400-01 | Rice | cytosol, peroxisome, plasma membrane, plastid | 21.13 | 51.85 |
| Os03t0606600-00 | Rice | extracellular, mitochondrion, peroxisome | 21.13 | 51.38 |
| Os01t0733001-00 | Rice | endoplasmic reticulum, nucleus | 11.13 | 47.97 |
| AT1G15960.1 | Thale cress | plasma membrane | 34.72 | 34.91 |
| AT1G80830.1 | Thale cress | plastid | 34.34 | 34.21 |
| AT5G03280.1 | Thale cress | plasma membrane | 20.0 | 8.19 |
Protein Annotations
| MapMan:24.2.3.10 | EntrezGene:827613 | ProteinID:AEE84090.1 | EMBL:AJ292076 | ArrayExpress:AT4G18790 | EnsemblPlantsGene:AT4G18790 |
| RefSeq:AT4G18790 | TAIR:AT4G18790 | RefSeq:AT4G18790-TAIR-G | EnsemblPlants:AT4G18790.1 | TAIR:AT4G18790.1 | ProteinID:CAB37464.1 |
| ProteinID:CAB78881.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 | GO:GO:0055072 |
| HAMAP:MF_00221 | RefSeq:NP_193614.1 | Symbol:NRAMP5 | InterPro:NRAMP_fam | PFAM:PF01566 | PO:PO:0000084 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00447 | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF46 | UniProt:Q9SN36 | TIGRFAMs:TIGR01197 | TMHMM:TMhelix |
| UniParc:UPI00000A5D37 | SEG:seg | : | : | : | : |
Description
NRAMP5Metal transporter Nramp5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN36]
Coordinates
chr4:-:10317416..10319736
Molecular Weight (calculated)
58784.8 Da
IEP (calculated)
4.552
GRAVY (calculated)
0.419
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.