Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17036 | Canola | cytosol, nucleus, plasma membrane | 93.4 | 93.93 |
| Bra040791.1-P | Field mustard | cytosol, nucleus, plasma membrane | 93.21 | 93.74 |
| CDY47594 | Canola | cytosol, nucleus, plasma membrane | 93.21 | 93.74 |
| CDY17090 | Canola | cytosol, peroxisome, plasma membrane | 93.77 | 93.25 |
| Bra040711.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 93.58 | 93.23 |
| CDY06751 | Canola | plasma membrane | 69.81 | 88.31 |
| KRH61379 | Soybean | cytosol, peroxisome, plasma membrane | 76.42 | 78.19 |
| KRH52059 | Soybean | cytosol, nucleus, plasma membrane | 76.98 | 78.16 |
| GSMUA_Achr9P26850_001 | Banana | plasma membrane | 59.06 | 73.82 |
| AT2G23150.1 | Thale cress | plasma membrane | 70.19 | 73.08 |
| PGSC0003DMT400055473 | Potato | cytosol, peroxisome, plasma membrane | 74.34 | 72.96 |
| PGSC0003DMT400059923 | Potato | cytosol, peroxisome, plasma membrane | 68.3 | 69.88 |
| AT5G67330.1 | Thale cress | plasma membrane | 67.36 | 69.73 |
| Solyc04g078250.2.1 | Tomato | cytosol, nucleus, plasma membrane | 67.55 | 68.98 |
| AT4G18790.1 | Thale cress | plasma membrane | 68.49 | 68.49 |
| TraesCS5D01G084900.1 | Wheat | plasma membrane | 70.57 | 68.37 |
| TraesCS5B01G078700.1 | Wheat | cytosol, plasma membrane, vacuole | 70.38 | 68.19 |
| TraesCS5A01G072200.1 | Wheat | cytosol, plasma membrane, vacuole | 70.19 | 68.01 |
| HORVU5Hr1G018850.2 | Barley | cytosol, nucleus, plasma membrane | 70.0 | 67.82 |
| EES17269 | Sorghum | cytosol, peroxisome, plasma membrane | 69.25 | 67.46 |
| Os12t0581600-01 | Rice | cytosol, nucleus, plasma membrane | 68.68 | 67.28 |
| GSMUA_Achr4P32750_001 | Banana | peroxisome, plasma membrane, vacuole | 58.68 | 66.74 |
| GSMUA_Achr6P07820_001 | Banana | cytosol, plasma membrane, vacuole | 55.66 | 66.59 |
| EER92665 | Sorghum | cytosol, peroxisome, plasma membrane | 64.53 | 66.28 |
| Zm00001d048129_P004 | Maize | cytosol, peroxisome, plasma membrane | 64.34 | 66.09 |
| HORVU4Hr1G069320.1 | Barley | vacuole | 64.91 | 65.9 |
| TraesCS4D01G254100.1 | Wheat | cytosol, plasma membrane, vacuole | 64.15 | 65.51 |
| TraesCS4D01G076500.1 | Wheat | cytosol, peroxisome, plasma membrane | 65.28 | 65.28 |
| TraesCS4B01G254300.1 | Wheat | cytosol, plasma membrane, vacuole | 64.15 | 65.26 |
| TraesCS4A01G237200.1 | Wheat | cytosol, peroxisome, plasma membrane | 65.28 | 65.16 |
| TraesCS4A01G050500.1 | Wheat | cytosol, peroxisome, plasma membrane | 63.96 | 65.07 |
| TraesCS4B01G078000.1 | Wheat | cytosol, peroxisome, plasma membrane | 65.09 | 64.97 |
| Os03t0208500-01 | Rice | plasma membrane | 63.77 | 64.5 |
| Zm00001d030846_P001 | Maize | plasma membrane | 68.68 | 64.31 |
| GSMUA_Achr3P18820_001 | Banana | cytosol, peroxisome, plasma membrane | 56.79 | 63.24 |
| HORVU4Hr1G013220.1 | Barley | mitochondrion, peroxisome, plasma membrane | 65.28 | 63.02 |
| Zm00001d033367_P001 | Maize | cytosol, nucleus, plasma membrane | 63.96 | 62.78 |
| KXG38042 | Sorghum | cytosol, nucleus, plasma membrane | 63.96 | 62.09 |
| Os03t0606600-00 | Rice | extracellular, mitochondrion, peroxisome | 23.21 | 56.42 |
| Os03t0607400-01 | Rice | cytosol, peroxisome, plasma membrane, plastid | 22.45 | 55.09 |
| Os01t0733001-00 | Rice | endoplasmic reticulum, nucleus | 11.13 | 47.97 |
| AT1G15960.1 | Thale cress | plasma membrane | 35.47 | 35.67 |
| AT1G80830.1 | Thale cress | plastid | 34.91 | 34.77 |
| AT5G03280.1 | Thale cress | plasma membrane | 20.19 | 8.27 |
Protein Annotations
| MapMan:24.2.3.10 | EntrezGene:841127 | ProteinID:AAG52643.1 | ProteinID:AEE32142.1 | EMBL:AF141204 | EMBL:AF410320 |
| ArrayExpress:AT1G47240 | EnsemblPlantsGene:AT1G47240 | RefSeq:AT1G47240 | TAIR:AT1G47240 | RefSeq:AT1G47240-TAIR-G | EnsemblPlants:AT1G47240.1 |
| TAIR:AT1G47240.1 | EMBL:AY102128 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005384 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006828 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0010015 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030001 |
| GO:GO:0030154 | GO:GO:0040007 | GO:GO:0046873 | GO:GO:0048767 | GO:GO:0051512 | GO:GO:0055072 |
| GO:GO:0071287 | GO:GO:0071421 | HAMAP:MF_00221 | RefSeq:NP_175157.1 | Symbol:NRAMP2 | InterPro:NRAMP_fam |
| PFAM:PF01566 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00447 | PANTHER:PTHR11706 |
| PANTHER:PTHR11706:SF46 | UniProt:Q9C6B2 | TIGRFAMs:TIGR01197 | TMHMM:TMhelix | UniParc:UPI00000A56C3 | SEG:seg |
Description
NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
Coordinates
chr1:-:17308803..17311505
Molecular Weight (calculated)
58420.6 Da
IEP (calculated)
4.791
GRAVY (calculated)
0.460
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.