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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, plasma membrane

Predictor Summary:
  • peroxisome 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, peroxisome, plasma membrane
Any Predictor:mitochondrion, peroxisome, plasma membrane
MultiLoc:peroxisome
TargetP:mitochondrion
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G078000.1 Wheat cytosol, peroxisome, plasma membrane 92.9 96.05
TraesCS4A01G237200.1 Wheat cytosol, peroxisome, plasma membrane 92.35 95.48
TraesCS4D01G076500.1 Wheat cytosol, peroxisome, plasma membrane 91.99 95.28
HORVU5Hr1G018850.2 Barley cytosol, nucleus, plasma membrane 74.13 74.41
Zm00001d033367_P001 Maize cytosol, nucleus, plasma membrane 72.68 73.89
KXG38042 Sorghum cytosol, nucleus, plasma membrane 71.95 72.34
GSMUA_Achr9P26850_001 Banana plasma membrane 55.56 71.93
GSMUA_Achr4P32750_001 Banana peroxisome, plasma membrane, vacuole 56.28 66.31
KRH61379 Soybean cytosol, peroxisome, plasma membrane 62.3 66.02
CDY17036 Canola cytosol, nucleus, plasma membrane 62.84 65.46
CDY47594 Canola cytosol, nucleus, plasma membrane 62.84 65.46
Bra040791.1-P Field mustard cytosol, nucleus, plasma membrane 62.84 65.46
AT1G47240.1 Thale cress plasma membrane 63.02 65.28
KRH52059 Soybean cytosol, nucleus, plasma membrane 61.93 65.13
Bra040711.1-P Field mustard cytosol, peroxisome, plasma membrane 62.84 64.85
CDY17090 Canola cytosol, peroxisome, plasma membrane 62.66 64.54
VIT_18s0001g09490.t01 Wine grape cytosol, peroxisome, plasma membrane 62.84 64.37
PGSC0003DMT400055473 Potato cytosol, peroxisome, plasma membrane 62.66 63.7
HORVU4Hr1G069320.1 Barley vacuole 60.47 63.6
PGSC0003DMT400059923 Potato cytosol, peroxisome, plasma membrane 59.38 62.93
Solyc04g078250.2.1 Tomato cytosol, nucleus, plasma membrane 59.02 62.43
CDY06751 Canola plasma membrane 47.54 62.29
CDY64917 Canola cytosol, plasma membrane, plastid 59.56 61.58
Bra012577.1-P Field mustard cytosol, plasma membrane, plastid 59.2 61.09
CDY62556 Canola plasma membrane 59.02 60.9
Os03t0606600-00 Rice extracellular, mitochondrion, peroxisome 24.04 60.55
AT4G18790.1 Thale cress plasma membrane 57.38 59.43
Solyc04g078230.1.1 Tomato cytosol, extracellular, plastid 16.76 56.44
KRH47958 Soybean cytosol, nucleus, plasma membrane 55.56 54.76
KRH06520 Soybean cytosol, nucleus, plasma membrane 55.37 54.38
Os01t0733001-00 Rice endoplasmic reticulum, nucleus 11.48 51.22
Solyc04g078240.1.1 Tomato cytosol 14.57 49.69
HORVU7Hr1G078330.2 Barley peroxisome, plasma membrane 32.6 34.76
HORVU4Hr1G077510.1 Barley plasma membrane 33.52 33.95
HORVU7Hr1G106570.1 Barley plasma membrane 33.7 33.76
HORVU3Hr1G042440.4 Barley mitochondrion, plasma membrane 28.78 26.07
HORVU5Hr1G050310.2 Barley plasma membrane 9.29 20.56
HORVU4Hr1G090460.5 Barley plasma membrane 10.02 13.41
HORVU5Hr1G050330.5 Barley plasma membrane 8.38 4.55
Protein Annotations
EnsemblPlants:HORVU4Hr1G013220.1EnsemblPlantsGene:HORVU4Hr1G013220GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0030001GO:GO:0046873HAMAP:MF_00221
InterPro:NRAMP_famPANTHER:PTHR11706PANTHER:PTHR11706:SF46PFAM:PF01566PRINTS:PR00447SEG:seg
TIGRFAMs:TIGR01197TMHMM:TMhelixUniParc:UPI000B484785UniProt:A0A287N9P9MapMan:24.2.3.10:
Description
No Description!
Coordinates
chrchr4H:+:45275951..45279534
Molecular Weight (calculated)
60123.4 Da
IEP (calculated)
4.818
GRAVY (calculated)
0.446
Length
549 amino acids
Sequence
(BLAST)
001: TSGKEGRPAL GFAQRPILTA RRSMAADGDP AACASTDVEA HALLRTSDDD DDPEQCCAFE PAEKIVVSIA ADSDADEEDL FSATGRTPPF SWRKLWLFTG
101: PGFLMSIAFL DPGNLEGDLQ AGATAGDTLL WLLLWATAMG LLVQLLAARL GVATGKNLAE LCRDEYPDWV RRALWLMAEV SMVSADIQEV IGSAIAIKIL
201: SRGFLPIWAG VVITALDCFI FLSIENYGVR KLEALFAVLI AIMAWSFAWM FIETKPNGKD LIVGLLVPKL SSRTLRQAVG IVGCVITPHN VFLHSALVQS
301: RKVDQNKEYQ VREALRYYSI ESTMALVVPF MINLFVTTVF AKGFYGTEEA GTIGLENAGQ YLQEKFGGDY FPILSIWGVG LLAAGTSSTI TGTYAGQFIM
401: DGFLNWRLKK WMRAMITRSF AIVPTIVVAL YFNASESALD VLNEWLNVLQ SVQIPFSLIP LITLVSKEQV MGVFKIGLTT QIVTWTVASL PILINGYLLL
501: DFFSSEIRGA VSGSFLCVAV VAYAAFLLYL ILRCTELPNH VFTPIAQRN
Best Arabidopsis Sequence Match ( AT4G18790.1 )
(BLAST)
001: MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET
Arabidopsis Description
NRAMP5Metal transporter Nramp5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN36]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.