CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030846_P001	Maize	plasma membrane	95.77	92.05
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	85.85	86.32
TraesCS5D01G084900.1	Wheat	plasma membrane	86.58	86.11
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	86.58	86.11
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	86.58	86.11
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	86.4	85.92
GSMUA_Achr9P26850_001	Banana	plasma membrane	59.56	76.42
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	62.13	72.53
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	72.79	72.53
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	68.01	71.43
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	28.31	71.3
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.3	70.34
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	66.36	69.96
KRH52059	Soybean	cytosol, nucleus, plasma membrane	67.1	69.92
CDY47594	Canola	cytosol, nucleus, plasma membrane	67.1	69.26
AT1G47240.1	Thale cress	plasma membrane	67.46	69.25
CDY17036	Canola	cytosol, nucleus, plasma membrane	66.91	69.07
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	66.91	69.07
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.1	68.61
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	68.01	68.52
CDY17090	Canola	cytosol, peroxisome, plasma membrane	66.91	68.29
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	64.15	67.24
CDY06751	Canola	plasma membrane	50.37	65.39
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	61.21	64.29
CDY62556	Canola	plasma membrane	61.58	62.97
CDY64917	Canola	cytosol, plasma membrane, plastid	61.4	62.9
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	61.4	62.78
AT4G18790.1	Thale cress	plasma membrane	60.29	61.89
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.01	60.12
KRH47958	Soybean	cytosol, nucleus, plasma membrane	60.29	58.89
KRH06520	Soybean	cytosol, nucleus, plasma membrane	60.48	58.86
Solyc04g078240.1.1	Tomato	cytosol	14.34	48.45
EER96161	Sorghum	cytosol, plasma membrane, vacuole	33.82	35.05
EER90213	Sorghum	plastid	34.74	34.36
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	33.09	33.64
KXG29392	Sorghum	plasma membrane	31.62	31.44
OQU83565	Sorghum	cytosol, peroxisome, plasma membrane	26.65	25.39
KXG37779	Sorghum	plasma membrane	15.62	18.24
OQU91151	Sorghum	plasma membrane	13.97	15.64
EES02232	Sorghum	plasma membrane	17.83	7.63
KXG37781	Sorghum	plasma membrane	15.62	6.88

Protein Annotations

MapMan:24.2.3.10	EntrezGene:8069691	UniProt:C5YQG7	EnsemblPlants:EES17269	ProteinID:EES17269	ProteinID:EES17269.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	EnsemblPlantsGene:SORBI_3008G143700	unigene:Sbi.13383	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI0001A8804F	RefSeq:XP_002443431.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:57515953..57519848

Molecular Weight (calculated)

58892.7 Da

IEP (calculated)

4.637

GRAVY (calculated)

0.469

Length

544 amino acids

Sequence
(BLAST)

001: MAAPAGDPAS AAAAARAVEE ARALLPASAP APDYDDDDED LEERAYEAAE KVIVSISDGP DPADGDGDDD AAFCSSSGSS TPPFSWRKLW LFTGPGFLMS
101: IAFLDPGNLE GDLQAGAVAG DTLLWLLMWA TAMGLLVQLL AARLGVATGR HLAELCRDEY PDWARRALWL MAEVAMVGAD IQEVIGSAIA IKILSRGYLP
201: LWAGVVITAL DCFIFLSLEN YGVRKLEAVF AILIATMAVS FAWMFTDTKP NGKDLLIGIL VPKLSSRTIR QAVGVVGCVI MPHNVFLHSA LVQSRKIDQN
301: KEYQVREALR YYSIESTIAL VVSFMINLFV TTVFAKGFYG SKEAGNIGLE NAGQYLQEKF GGGFFPILYI WGIGLLAAGQ SSTITGTYAG QFIMGGFLNL
401: RLKKWVRALI TRSFAIVPTI IVALFFDTSD SALDVLNEWL NVLQSIQIPF ALIPLITLVS KEQVMGVFKI GPNTQAVTWT VATLLITING YLLMDFFSSE
501: IRGPLSGSLL CVAVLIYASF VMYLILRGTE LSEKIVKAVH SSFS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.