Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007397_P003 | Maize | cytosol, peroxisome, plasma membrane | 83.54 | 83.83 |
| Os01t0503400-03 | Rice | plasma membrane | 62.0 | 64.36 |
| TraesCS3D01G206000.1 | Wheat | cytosol, peroxisome, plasma membrane | 60.25 | 63.35 |
| TraesCS3B01G230400.1 | Wheat | cytosol, peroxisome, plasma membrane | 60.25 | 63.35 |
| TraesCS3A01G195100.1 | Wheat | cytosol, peroxisome, plasma membrane | 60.25 | 63.35 |
| HORVU3Hr1G042440.4 | Barley | mitochondrion, plasma membrane | 60.07 | 56.6 |
| OQU88782 | Sorghum | cytosol, peroxisome, plasma membrane | 43.78 | 46.73 |
| EER96161 | Sorghum | cytosol, plasma membrane, vacuole | 41.86 | 45.52 |
| KXG29392 | Sorghum | plasma membrane | 38.35 | 40.04 |
| EER90213 | Sorghum | plastid | 37.3 | 38.73 |
| EER92665 | Sorghum | cytosol, peroxisome, plasma membrane | 25.57 | 28.29 |
| KXG38042 | Sorghum | cytosol, nucleus, plasma membrane | 26.97 | 28.21 |
| EES17269 | Sorghum | cytosol, peroxisome, plasma membrane | 25.39 | 26.65 |
| KXG37779 | Sorghum | plasma membrane | 15.76 | 19.31 |
| OQU91151 | Sorghum | plasma membrane | 14.71 | 17.28 |
| KXG37781 | Sorghum | plasma membrane | 17.69 | 8.17 |
| EES02232 | Sorghum | plasma membrane | 17.69 | 7.94 |
Protein Annotations
| EnsemblPlants:OQU83565 | EnsemblPlantsGene:SORBI_3005G134600 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 | InterPro:NRAMP_fam |
| PANTHER:PTHR11706 | PANTHER:PTHR11706:SF47 | PFAM:PF01566 | PRINTS:PR00447 | ProteinID:OQU83565 | ProteinID:OQU83565.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000B42665A | UniProt:A0A1Z5RJE5 | MapMan:24.2.3.10 | : |
Description
hypothetical protein
Coordinates
chr5:+:58153803..58173001
Molecular Weight (calculated)
61600.4 Da
IEP (calculated)
8.398
GRAVY (calculated)
0.660
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEAGRRME RGEGDQLRGA TTGSRRVAAA VVGASGGEIE IQMEAATVGS GASAAAAAAS TSSGQEGDAE DGLQQTPTWK RFLAHAGPGF LISLAYLDPS
101: NGELHLIVLR RKEVQTDLQA GSIHKYELLW VLFFGFFLVL VIQSLAVKLG IITGRNLAEM CMYEYPKYVK YGLWLLIEVG VIAATIPGVL GTALAYNILL
201: NIPFLAGVLI CGASTFLLLG LQTYGVRKME LIGVIFMLLI TVCFFIELSS VNPPMGEVIE GLFIPRLRGV YAMSDAIALF SVLIVPHNLF LHSSLVVSRK
301: ISPSSKRFKD TSTFFLIENA CAMLLVLLVN VAIVSTTGTI CANTQLVDNI DACSSLTLKS TSILLKNMFG RSTSKIYGLA LLASGQSNTV TTSYAGQYIM
401: QGFSGMRKCI IFMIAPCFTV IPSLIICSVG GAPNIRQLIN ISAIILAFVL PFSLVPLLKF SSSCVVKVPY KNSNSIVKVA WILSVVIMGI NIYFFCNSFI
501: SCLVHSELPR AVNAIISILV FPFMAAYIAA LIYLAFRKVN AAGLFPSVPV SNGTEVEAWR QERIADDIGV R
101: NGELHLIVLR RKEVQTDLQA GSIHKYELLW VLFFGFFLVL VIQSLAVKLG IITGRNLAEM CMYEYPKYVK YGLWLLIEVG VIAATIPGVL GTALAYNILL
201: NIPFLAGVLI CGASTFLLLG LQTYGVRKME LIGVIFMLLI TVCFFIELSS VNPPMGEVIE GLFIPRLRGV YAMSDAIALF SVLIVPHNLF LHSSLVVSRK
301: ISPSSKRFKD TSTFFLIENA CAMLLVLLVN VAIVSTTGTI CANTQLVDNI DACSSLTLKS TSILLKNMFG RSTSKIYGLA LLASGQSNTV TTSYAGQYIM
401: QGFSGMRKCI IFMIAPCFTV IPSLIICSVG GAPNIRQLIN ISAIILAFVL PFSLVPLLKF SSSCVVKVPY KNSNSIVKVA WILSVVIMGI NIYFFCNSFI
501: SCLVHSELPR AVNAIISILV FPFMAAYIAA LIYLAFRKVN AAGLFPSVPV SNGTEVEAWR QERIADDIGV R
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.