Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G195100.1 | Wheat | cytosol, peroxisome, plasma membrane | 99.08 | 99.08 |
| TraesCS3B01G230400.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.34 | 98.34 |
| HORVU3Hr1G042440.4 | Barley | mitochondrion, plasma membrane | 93.74 | 83.99 |
| Os01t0503400-03 | Rice | plasma membrane | 68.88 | 68.0 |
| OQU83565 | Sorghum | cytosol, peroxisome, plasma membrane | 63.35 | 60.25 |
| Zm00001d007397_P003 | Maize | cytosol, peroxisome, plasma membrane | 62.8 | 59.93 |
| TraesCS4D01G299400.1 | Wheat | plasma membrane | 50.64 | 51.12 |
| TraesCS7D01G324000.1 | Wheat | plasma membrane | 47.33 | 48.95 |
| TraesCS7D01G451900.1 | Wheat | plasma membrane | 42.17 | 41.79 |
| TraesCS4D01G076500.1 | Wheat | cytosol, peroxisome, plasma membrane | 28.73 | 29.43 |
| TraesCS4D01G254100.1 | Wheat | cytosol, plasma membrane, vacuole | 27.44 | 28.71 |
| TraesCS5D01G084900.1 | Wheat | plasma membrane | 28.91 | 28.7 |
| TraesCS5D01G166000.1 | Wheat | plasma membrane | 18.97 | 8.31 |
| TraesCS4D01G036000.3 | Wheat | plasma membrane | 16.76 | 7.5 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G206000.1 | EnsemblPlantsGene:TraesCS3D01G206000 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0030001 | GO:GO:0046873 | InterPro:NRAMP_fam | PANTHER:PTHR11706 |
| PANTHER:PTHR11706:SF47 | PFAM:PF01566 | PRINTS:PR00447 | SEG:seg | TIGRFAMs:TIGR01197 | TMHMM:TMhelix |
| MapMan:24.2.3.10 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:267250179..267288265
Molecular Weight (calculated)
58847.6 Da
IEP (calculated)
6.894
GRAVY (calculated)
0.718
Length
543 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERGSIGRD GGQQQDGNGR AVAIADGDVI EMEAAAASTV ASSGQQGDDA AGGVHVQGPR WKRFLAYVGP GFLISMAYLD PSNLQTDLQA GYSHRYELLW
101: VLLFGFIFVL IIQSLAAKLG IVTGRHLAEL CMSEYPKPVR YGLWFFAELG VIAATIPGVL GTALAYNMVL DLPFWAGVLI CAATVILLLG LQSYGVRKLE
201: FMIAVFMLIM ASCFFIELSH VNPPMNELIE GLFIPRLKGH YAISDAVALI SALVVPHNLF LHSSLVSSRN LPSSSEAVKD ASVFFLLENA FALFLALVIN
301: VAIVSLSGTI CADNLSLDDT NTCSSLTLKS ASVLFKNILG RSRSIFYGLA LLASGQSCAV VTTYSGQYIM QGFSGMRVFI IYLFAPCLTM VPTLIICGIG
401: GALRVRQLIN IAAVILSFVL PFALVPLLKF SSCCSMIGPY KNSTWITRIS WILSLVIIGI NTYFFCTSFV SWLVYSDLPR FAKAIISTLV FPFMAAYIVA
501: VIYLAFRKVS TNAVLPSSSV SCEIEVAEVP RQDNKDEVLA LHC
101: VLLFGFIFVL IIQSLAAKLG IVTGRHLAEL CMSEYPKPVR YGLWFFAELG VIAATIPGVL GTALAYNMVL DLPFWAGVLI CAATVILLLG LQSYGVRKLE
201: FMIAVFMLIM ASCFFIELSH VNPPMNELIE GLFIPRLKGH YAISDAVALI SALVVPHNLF LHSSLVSSRN LPSSSEAVKD ASVFFLLENA FALFLALVIN
301: VAIVSLSGTI CADNLSLDDT NTCSSLTLKS ASVLFKNILG RSRSIFYGLA LLASGQSCAV VTTYSGQYIM QGFSGMRVFI IYLFAPCLTM VPTLIICGIG
401: GALRVRQLIN IAAVILSFVL PFALVPLLKF SSCCSMIGPY KNSTWITRIS WILSLVIIGI NTYFFCTSFV SWLVYSDLPR FAKAIISTLV FPFMAAYIVA
501: VIYLAFRKVS TNAVLPSSSV SCEIEVAEVP RQDNKDEVLA LHC
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.