CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	CDX78905	AT4G19030.1	21798944
AT5G67330.1	CDX98596	AT4G19030.1	21798944
AT5G67330.1	CDX99411	AT4G19030.1	21798944
AT5G67330.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57441	Canola	peroxisome	76.28	99.22
AT5G67330.1	Thale cress	plasma membrane	73.12	95.12
CDY21478	Canola	plasma membrane	56.61	74.95
CDX76871	Canola	cytosol, peroxisome, plasma membrane	57.81	74.76
KRH28413	Soybean	plasma membrane	56.76	74.7
KRH77065	Soybean	plasma membrane	56.76	74.56
KRH04493	Soybean	peroxisome	56.16	72.48
KRH58028	Soybean	plasma membrane	55.86	72.09
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	54.95	71.91
VIT_07s0129g00620.t01	Wine grape	plasma membrane	55.71	71.35
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	54.95	71.07
CDX83202	Canola	plasma membrane	57.21	70.82
CDY17036	Canola	cytosol, nucleus, plasma membrane	53.45	67.55
CDY47594	Canola	cytosol, nucleus, plasma membrane	53.15	67.17
CDY17090	Canola	cytosol, peroxisome, plasma membrane	52.7	65.85
CDY46091	Canola	cytosol, nucleus, plastid	18.32	63.54
CDY06751	Canola	plasma membrane	39.64	63.01
CDY64917	Canola	cytosol, plasma membrane, plastid	49.1	61.58
CDY62556	Canola	plasma membrane	48.95	61.28
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	7.81	44.83
CDY33364	Canola	cytosol, peroxisome, plasma membrane	27.63	37.4
CDY35054	Canola	extracellular	6.01	37.04
CDX87346	Canola	cytosol, peroxisome, plasma membrane	28.23	36.22
CDY39940	Canola	cytosol, peroxisome, plasma membrane	28.08	36.03
CDY63970	Canola	plastid	28.68	35.9
CDX79348	Canola	cytosol, plasma membrane, vacuole	27.33	34.6
CDY35053	Canola	mitochondrion, plasma membrane	14.56	33.68
CDX67970	Canola	plasma membrane	24.17	33.26
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	28.53	28.57
CDX70318	Canola	plasma membrane	14.86	8.26
CDY10393	Canola	plasma membrane	14.56	8.11

Protein Annotations

MapMan:24.2.3.10	GO:A0A078FIN1	UniProt:A0A078FIN1	EnsemblPlants:CDY12837	ProteinID:CDY12837	ProteinID:CDY12837.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00070478001	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI0004EF32EE	SEG:seg	:	:	:

Description

BnaC07g15960DBnaC07g15960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIN1]

Coordinates

chrLK032027:+:571253..575770

Molecular Weight (calculated)

74588.5 Da

IEP (calculated)

5.497

GRAVY (calculated)

0.021

Length

666 amino acids

Sequence
(BLAST)

001: MLREMKRKER DKEDKNRERS KENDKEVERD HDGARSRVRE KDGHEKHKER KRQRERIERE TLERERLKLE RESEKIERER AHEKQLGDGD RDMAIDQSEK
101: ENAGDEEHGR SSELMDITMT PTSLPSQIPN SDVRILEGHT SEQQQERTGT AVTLKMSETE RARPLLASEE RAYEDTEKVH IVGVDEEDGA DYDDELGNSP
201: RFSWKKLWLF TGPGFLMSIA FLDPGNLESD LQAGAIAGYS LIWLLMWATA IGLLIQLLSA RLGVATGRHL AELCREEYPT WARMVLWIMA EIALIGADIQ
301: EVIGSAIAIK ILSNGLVPLW AGVVITALDC FIFLFLENYG IRKLEAVFAI LIATMALAFA WMFGQTKPSG TELLVGALVP KLSSRTIKQA VGIVGCIIMP
401: HNVFLHSALV QSRKVDPKKR FRVKEALKYY SIESTGALAV SFIINVFVTT VFAKAFYGTD IADTIGLANA GQYLQDKYGG GFFPILYIWA IGVLAAGQSS
501: TITGTYAGQF IMGGFLNLKM KKWVRALITR SCAIVPTMIV ALVFDSSDSM LDELNEWLNV LQSVQIPFAV IPLLCLVSNE QIMGSFKIQP LVQTISWIVA
601: ALVIAINGYL MVDFFSGAAT SVVLLVLVII FAVAYVVFVL YLISRGLTYT PWQLVSSQKV TERDDE

Best Arabidopsis Sequence Match ( AT5G67330.1 )
(BLAST)

001: MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS
301: FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY VVFVLYLISR GLTYTPWQLV
501: ASSHKEPQRD DE

Arabidopsis Description

NRAMP4Metal transporter Nramp4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN18]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.