CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21478	Canola	plasma membrane	92.75	99.2
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	90.71	95.5
CDX76871	Canola	cytosol, peroxisome, plasma membrane	85.87	89.71
AT2G23150.1	Thale cress	plasma membrane	82.9	87.62
CDY46091	Canola	cytosol, nucleus, plastid	26.77	75.0
KRH28413	Soybean	plasma membrane	70.45	74.9
CDY57441	Canola	peroxisome	70.82	74.41
KRH77065	Soybean	plasma membrane	70.07	74.36
VIT_07s0129g00620.t01	Wine grape	plasma membrane	71.56	74.04
KRH58028	Soybean	plasma membrane	69.7	72.67
KRH04493	Soybean	peroxisome	69.7	72.67
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	66.54	70.33
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	66.91	69.9
CDY47594	Canola	cytosol, nucleus, plasma membrane	66.91	68.31
CDY17036	Canola	cytosol, nucleus, plasma membrane	66.54	67.93
CDY17090	Canola	cytosol, peroxisome, plasma membrane	66.54	67.17
CDY06751	Canola	plasma membrane	49.81	63.96
CDY62556	Canola	plasma membrane	61.34	62.03
CDY64917	Canola	cytosol, plasma membrane, plastid	60.97	61.77
CDY12837	Canola	nucleus	70.82	57.21
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	9.48	43.97
CDY35054	Canola	extracellular	7.25	36.11
CDY33364	Canola	cytosol, peroxisome, plasma membrane	32.71	35.77
CDX87346	Canola	cytosol, peroxisome, plasma membrane	33.64	34.87
CDY39940	Canola	cytosol, peroxisome, plasma membrane	33.64	34.87
CDY63970	Canola	plastid	34.01	34.4
CDX79348	Canola	cytosol, plasma membrane, vacuole	33.09	33.84
CDX67970	Canola	plasma membrane	29.55	32.85
CDY35053	Canola	mitochondrion, plasma membrane	16.54	30.9
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	33.83	27.37
CDX70318	Canola	plasma membrane	18.4	8.26
CDY10393	Canola	plasma membrane	18.22	8.19

Protein Annotations

MapMan:24.2.3.10	GO:A0A078D271	EnsemblPlants:CDX83202	ProteinID:CDX83202	ProteinID:CDX83202.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0030001
GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00138742001	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0004EEBEC3	SEG:seg

Description

BnaA03g23040D

Coordinates

chrLK031832:-:385305..387258

Molecular Weight (calculated)

59502.1 Da

IEP (calculated)

4.870

GRAVY (calculated)

0.512

Length

538 amino acids

Sequence
(BLAST)

001: MSRSENDRPL LIDRIDEEEE ERAYDDTEKV HIVRDEDDNE RDLEYGVGCG GAPPFSWRKL WLFTGPGFLM SIAFLDPGNL EGDLQAGAVA GYSLLWLLMW
101: ATAMGLLVQL LSARLGVATG RHLAELCREE YPTWAGMVLW VMAELALIGS DIQEVIGSAI AIKILTNGLL PLWAGVIITA LDCFVFLFLE NYGIRKLEAV
201: FAVLIGTMAV AFAWMFGQAK PSGSELLVGI LVPKLSSRTI QKAVGVVGCI IMPHNVFLHS ALVQSREVNK RQKYRVQEAI NYYTIESTIA LIVSFMINLF
301: VTTVFAKGFY NTDLADSIGL VNAGQYLQDK YGGGLFPILY IWGIGLLAAG QSSTITGTYA GQFIMGGFLN FKMKKWLRAL ITRSCAIIPT IIVALVFDSS
401: EATLDVLNEW LNVLQSIQIP FALIPLLCLV SKEQIMGSFK IGPFYQTIAW LVAALVIMIN GYLLLEFFSS EVSGVIYTGF VTLFSLCVLY YISSSSYVLV
501: YKVLKMKNNL SPSAIVVDFN SSNNTQIEKK CSFFVLSE

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.