CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008437.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	99.06	99.06
CDX67970	Canola	plasma membrane	85.34	93.8
CDX79348	Canola	cytosol, plasma membrane, vacuole	92.48	93.54
CDX87346	Canola	cytosol, peroxisome, plasma membrane	89.66	91.91
CDY39940	Canola	cytosol, peroxisome, plasma membrane	89.47	91.71
AT1G80830.1	Thale cress	plastid	90.79	90.79
CDY33364	Canola	cytosol, peroxisome, plasma membrane	79.32	85.77
CDY35053	Canola	mitochondrion, plasma membrane	44.74	82.64
CDY35054	Canola	extracellular	16.73	82.41
CDY35055	Canola	endoplasmic reticulum, extracellular, vacuole	17.48	80.17
CDY64859	Canola	cytosol, peroxisome, plasma membrane, plastid	99.44	79.55
KRH23641	Soybean	plastid	78.95	77.21
VIT_09s0070g00210.t01	Wine grape	plastid	78.2	76.89
KRH09654	Soybean	plastid	78.2	76.19
KRH47347	Soybean	plasma membrane	77.07	75.23
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.18	73.56
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	74.81	73.3
TraesCS7D01G451900.1	Wheat	plasma membrane	74.62	72.45
TraesCS7A01G464300.2	Wheat	plasma membrane	74.25	72.08
TraesCS7B01G364800.1	Wheat	plasma membrane	74.25	72.08
HORVU7Hr1G106570.1	Barley	plasma membrane	73.87	71.72
Os06t0676000-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	73.31	70.91
EER90213	Sorghum	plastid	73.31	70.91
Zm00001d014391_P008	Maize	plasma membrane	73.12	70.73
KRH44555	Soybean	mitochondrion	77.07	69.73
CDY57441	Canola	peroxisome	35.71	37.11
CDY21478	Canola	plasma membrane	34.02	35.98
CDY46091	Canola	cytosol, nucleus, plastid	12.97	35.94
CDX76871	Canola	cytosol, peroxisome, plasma membrane	34.77	35.92
CDY17036	Canola	cytosol, nucleus, plasma membrane	34.96	35.29
CDY47594	Canola	cytosol, nucleus, plasma membrane	34.77	35.1
CDY17090	Canola	cytosol, peroxisome, plasma membrane	35.15	35.08
CDY62556	Canola	plasma membrane	34.96	34.96
CDY64917	Canola	cytosol, plasma membrane, plastid	34.77	34.84
CDX83202	Canola	plasma membrane	34.4	34.01
CDY06751	Canola	plasma membrane	26.5	33.65
CDY12837	Canola	nucleus	35.9	28.68
CDY10393	Canola	plasma membrane	20.49	9.11
CDX70318	Canola	plasma membrane	20.3	9.02

Protein Annotations

MapMan:24.2.3.10	GO:A0A078JCY8	UniProt:A0A078JCY8	EnsemblPlants:CDY63970	ProteinID:CDY63970	ProteinID:CDY63970.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSBRNA2T00040757001	HAMAP:MF_00221	InterPro:NRAMP_fam
PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix
UniParc:UPI0004EF18EB	SEG:seg	:	:	:	:

Description

BnaC02g46600DBnaC02g46600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCY8]

Coordinates

chrLK034379:+:12124..18102

Molecular Weight (calculated)

57695.7 Da

IEP (calculated)

8.656

GRAVY (calculated)

0.618

Length

532 amino acids

Sequence
(BLAST)

001: MAASASERPQ FISSNGGNRS FSNAPLIDNS DPNQIIVPEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAQYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EHCRAEYSKV PNFLLWVVAE IAVVACDIPE VIGTAFALNM LFRIPVWIGV LLTGLSTLML LALQQYGVRK LEFLIAFLVF TIALCFVIEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSSTGI KEACRFYLIE SGLALMIAFL INVSVISVSG AVCNAPDLTP
301: EDRAKCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNHMA ITTLTWVIGA LIMGINIYYI VSSFTKLLIH SHMKLALVIF CGILGFSGIA IYLASIAYLV FRKNRKAIPL
501: LASTNSQTVE TLPRQDIVDM QLHGKAAASD LD

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.