Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026089.1-P | Field mustard | plasma membrane | 89.81 | 20.73 |
| CDY33364 | Canola | cytosol, peroxisome, plasma membrane | 88.89 | 19.51 |
| Bra033988.1-P | Field mustard | plasma membrane | 93.52 | 18.6 |
| CDX67970 | Canola | plasma membrane | 79.63 | 17.77 |
| AT1G15960.1 | Thale cress | plasma membrane | 85.19 | 17.46 |
| CDY63970 | Canola | plastid | 82.41 | 16.73 |
| CDY39940 | Canola | cytosol, peroxisome, plasma membrane | 78.7 | 16.38 |
| CDX87346 | Canola | cytosol, peroxisome, plasma membrane | 78.7 | 16.38 |
| CDX79348 | Canola | cytosol, plasma membrane, vacuole | 79.63 | 16.35 |
| KRH09654 | Soybean | plastid | 79.63 | 15.75 |
| VIT_09s0070g00210.t01 | Wine grape | plastid | 77.78 | 15.53 |
| KRH23641 | Soybean | plastid | 77.78 | 15.44 |
| KRH47347 | Soybean | plasma membrane | 75.93 | 15.05 |
| Solyc03g116900.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 72.22 | 14.94 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 75.0 | 14.92 |
| EER90213 | Sorghum | plastid | 74.07 | 14.55 |
| Zm00001d014391_P008 | Maize | plasma membrane | 74.07 | 14.55 |
| Os06t0676000-01 | Rice | cytosol, mitochondrion, plasma membrane, plastid | 73.15 | 14.36 |
| HORVU7Hr1G106570.1 | Barley | plasma membrane | 72.22 | 14.23 |
| KRH44555 | Soybean | mitochondrion | 76.85 | 14.12 |
| TraesCS7D01G451900.1 | Wheat | plasma membrane | 71.3 | 14.05 |
| TraesCS7B01G364800.1 | Wheat | plasma membrane | 71.3 | 14.05 |
| TraesCS7A01G464300.2 | Wheat | plasma membrane | 71.3 | 14.05 |
| CDY64859 | Canola | cytosol, peroxisome, plasma membrane, plastid | 82.41 | 13.38 |
| CDY06751 | Canola | plasma membrane | 31.48 | 8.11 |
| CDY57441 | Canola | peroxisome | 37.04 | 7.81 |
| CDY21478 | Canola | plasma membrane | 36.11 | 7.75 |
| CDX76871 | Canola | cytosol, peroxisome, plasma membrane | 36.11 | 7.57 |
| CDX83202 | Canola | plasma membrane | 36.11 | 7.25 |
| CDY17036 | Canola | cytosol, nucleus, plasma membrane | 32.41 | 6.64 |
| CDY47594 | Canola | cytosol, nucleus, plasma membrane | 32.41 | 6.64 |
| CDY64917 | Canola | cytosol, plasma membrane, plastid | 32.41 | 6.59 |
| CDY62556 | Canola | plasma membrane | 32.41 | 6.58 |
| CDY17090 | Canola | cytosol, peroxisome, plasma membrane | 32.41 | 6.57 |
| CDY12837 | Canola | nucleus | 37.04 | 6.01 |
| CDY46091 | Canola | cytosol, nucleus, plastid | 5.56 | 3.12 |
| CDY10393 | Canola | plasma membrane | 18.52 | 1.67 |
| CDX70318 | Canola | plasma membrane | 18.52 | 1.67 |
| CDY35053 | Canola | mitochondrion, plasma membrane | 3.7 | 1.39 |
| CDY35055 | Canola | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078HC81 | UniProt:A0A078HC81 | EnsemblPlants:CDY35054 | ProteinID:CDY35054 | ProteinID:CDY35054.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 | EnsemblPlantsGene:GSBRNA2T00057923001 | InterPro:NRAMP_fam | PFAM:PF01566 |
| PRINTS:PR00447 | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF38 | TMHMM:TMhelix | UniParc:UPI0004EE641E | : |
Description
BnaA06g10640DBnaA06g10640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC81]
Coordinates
chrLK032346:-:49775..50200
Molecular Weight (calculated)
11884.2 Da
IEP (calculated)
8.714
GRAVY (calculated)
1.130
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSYWFSLCT VIGTAFALNM LFNIPVWIGV LLTGFSTLIL LALQKYGIRK LEFLIAFLVL TIAVCFLIEL HYSKPDPKEV LYGLFVPQLK GNGATGLAIS
101: LLGAMVMP
101: LLGAMVMP
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
Arabidopsis Description
NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.